rasl12 (rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763)


Basic Information

Item Value
gene id rasl12
gene name rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1082551 ~ 1092167 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260226.2
TGAGCAGTGATCTAGGGTCAGAATCTTCAGGATGGGGGGAGGGTCTGTATCCACACTGCCACGCCCACACGAGCTTCAGCATCCATccacacacataccacagcTCAACTTCCAGTGAGTGAAGTTCTCAGCTTCAGGATCCCCACTGTCCACTGTTCCCCCACAGCATGAGCTGTTCGGCCAGATAGTCTTCTACAACAGCCTGGAGGAACTCCTGGAGTCCTGCACGAGCCTGCGTGAGACTGAGAGATGGCGCGCGGTGGAAGAACCTGTAGAGTATCCAGCTGGACTGCAGGAGAAATCTCCCGGAGCTCCTCAGGCAGATGTTCCTGCAGGAGGCAGGCGGAGAGGAGCTGCTGAGGATCAGCTCGCGCTGCAGTGGAGACCCGGATCAGGATGGCTCTGATGTTTGGGAAAGCGAGAACGTGCAATATCGTGACAGTTCCAGAGCACGAGCCTGCAGAGTGTAATGTGGTGGTGCTGGGAGCTCTGGGCTCTGGTAAATCAGCCCTGACTGTGAAGTTCCTCACAAAGCGCTTCATTAGCGAATATGATCCAAATCTCGAGGACACTTATTCTTCTGAGGAGCTTGTGGACCAGCAGCCAGTTCTGGTCAAAGTGATGGACACAGCTGACCAGGATGGACCAGTGAACTGTGAGCGCTACCTGGGCTGGGCCAGTGCATTTCTCATCGTCTACAGTATAGATAACAGATACAGCTTTGAGGTGTGTCAGCAGTATCTGGAGACTGTGACGCTGTACACTAAAGGCCTGCAGCCTGAGGCTCCAGTCATTCTACTGGGCAACAAAGTGGACATGGAAAGATACAGgcagGTCAGTAAGTCGGATGGAGCGTCTCTGGCTGCTCGGTTCAGCTGCTTGTTTTTCGAGGTGTCTGCCTGCCTGGACTTCTTGTCAGTTCAGCATGTTTTTCATGATGCGGTTCGGGAGGTCCGGCGTGAGGCTGAGAGGAGTCTAGGGGTCCGGCCTCTCTTCATCAGCGAGGACAGACCCACCATCAGCCTCTCTGCACCCCCTCCTCTCCTGCCCTGCTATAAGGAGCTGCCCACCCCAGCCACTGCCAAGCTGGTGACGGTCAAATCCTCCAGAGCCCAGAGCAAACGCAGAGCCCCCACGCTCACCCTGCTGAAGGGCTTCAAAATCTTCTGACTCAGTGCTGCCCCCTGCTGGCAATGAAGCACACATGTTGTATTCAGTTATGAAACCACAAAACACAACATGGACTGGTTTGGGCTTGAGTTGAGCTGTGATGCTTCAGCAGGCAAGTTGAAGTTAAACAGTTAAAGGAGATCTCTGAAGAGGTGAAAAGGACTTGggctgtagtgaaacatgaaatcaagtatgaacttttgttgaatatcccagcattctgaaatacagcgatTTAACAGGG

Function

symbol description
rasl12 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in adaxial cell and blood vasculature. Orthologous to human RASL12 (RAS like family 12).

NR:

description
PREDICTED: ras-like protein family member 12

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07854 RASL12, RIS; Ras-like protein family member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260226.2 True 1414 mRNA 0.53 5 1082551 1092167

Neighbor

gene id symbol gene type direction distance location
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 10935 1048244 ~ 1071616 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 45617 1011639 ~ 1036934 (+)
ankdd1a ankdd1a,LOC107685207 coding upstream 82267 974937 ~ 1000284 (+)
immp1l immp1l,LOC107594745 coding upstream 400929 671881 ~ 681622 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding upstream 444656 618157 ~ 637895 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding downstream 31176 1123343 ~ 1153288 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding downstream 67605 1159772 ~ 1194746 (+)
LOC103026058 NA coding downstream 200622 1292789 ~ 1306241 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 348588 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 608670 1700837 ~ 1705998 (+)
G39539 NA non-coding upstream 115223 964928 ~ 967328 (+)
G39529 NA non-coding upstream 202655 879685 ~ 879896 (+)
G39512 NA non-coding upstream 314937 767338 ~ 767614 (+)
G39511 snrpa1,LOC106587741 non-coding upstream 328714 750822 ~ 753837 (+)
G39506 NA non-coding upstream 331931 745568 ~ 750620 (+)
LOC111192491 NA non-coding downstream 61377 1153544 ~ 1159078 (+)
G39616 NA non-coding downstream 93405 1185572 ~ 1186479 (+)
G39621 NA non-coding downstream 117115 1209282 ~ 1209733 (+)
G39622 NA non-coding downstream 117797 1209964 ~ 1214713 (+)
G39625 slc38a7,LOC107711584,LOC107596460,LOC107683258 non-coding downstream 124135 1216302 ~ 1218795 (+)
pdcd7 NA other upstream 37204 1038573 ~ 1045347 (+)
plekho2 NA other upstream 119267 922757 ~ 963284 (+)
commd2 commd2 other upstream 791529 281585 ~ 291022 (+)
G39619 mrpl21 other downstream 114620 1206787 ~ 1209096 (+)
G39626 NA other downstream 127639 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 173690 1265857 ~ 1268385 (+)
LOC111192494 NA other downstream 318263 1410430 ~ 1413799 (+)
polr2l NA other downstream 328224 1420391 ~ 1427117 (+)

Expression


Co-expression Network