LOC103026058


Basic Information

Item Value
gene id LOC103026058
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1292789 ~ 1306241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260233.3
tctcatgcAGCTGTTATAGCTGTTATATTAGTGTTCACAAGTTGCTTATATGATGTTTTAGTTCCACATTAAAAATAGAGTTATAGTCAAGGGTttcaatttgttttctttttgttaaatAATGAAGTTTACAtgcttttctgtgtgtttataggaGTACATGTGGAAGTTCCAACTGATCcaaaacattagcattttttatttacagcagaCATGGGGGATTAACTGTACACCGATGCCAGTGATCCATTTCATCTATCGTAGTGTTTCCTGCTACAGCCTGATGACTTGTTTAGGTTGAGcacttcatattttttttttgttgattgtaCCCACAACTGGTTGGCCACGCTGAAGATATGGAGCTCTCCATGCAGCAGTCACTGAAGAAGAACCAATCTACAGAGATGACCACTAAAATCTCACAATTCCACCATTTCCTGTTTAAACAGTCAAGCCCGGGCTTTCAGTGGGAGTCCCAACCTAACCAAGATGTCAGTCCAGGAGATATGCAAGATCTCCTGACGACCAACCCACACGAGTTCAAACACTGCAAACTTAACATGATAAGACATGACCTAGCACATGCCAAACCTTTTAAAGAGCCAACCCTTTCAATCAGCATTACTGGAAGAGATAATATAGGCAGATCTTTACCTGGTGATGAGGTCTGTGTTCAGATCTTGAGCAGAGAACCTCAGGCAGATGGAGGCAACCTGCTGACAGGGAAGGTTGTAGGACTGATGCATAGAGATGAGGAAAGCTGTAACTTTATCTGTAGGATGGAAGGAAACAAACAGCTTGCGACACCCATCAATAACAACATGACCTGGATATATGTGGttcaaaaaaaagcaaacaaaatagATGTCCGTAAGGTCCAGCCCAACAGTGACCAGTGGGTTACGGACAAATTCATAGATAAAGATGATGATCAGCTATTAGTCGTCAAGGTGCTAAAATGGGAAAAGCATTGTACGTTTCCTCTTGGAGTGGTTACCAAGGTTCTTTCACAGAAGGATTATCTGGATGAAATGTTTCTGAAACTTTCTAAAGGGTTTGGTAAGGAAGACAACCCTACCTTGTCACCTCAACCCAAAGATGATGAAGAACAAGATGATAAAGACAGGCGGgatttttgtgaagaaaaaacatttaccaTTGATCCCAGGGATGCACAAGACTTGGATGATGCCATCAGTGTGATTGACAAAGGAGAAAACTATGAGATTGCTGTCCATATCACAGATGTTGCAAGTTATGTGAGCAAagacagtgaggaggatgaaaCTGCAAAACAGAAAGGCAGAACGATATACACTCGTCCCACCACAGAGGAAAAGGAAACCATATTCATGATCTCCAGGAAGCTGAGCTCTTAGAAACTGAGTTTAATTCCTCATCAGGAACGAAAGACCGTGTCACTGGTGTTAGGTATTAGTAAATCCAACAACACCATATTATcccgctctctcactctctctcgtgTCAGGTCTCAGTTGCGTCTGTCATATGAGAAGGCAGACAGGATCATCCTCGAAAGATGGTCACAGCCTCTGAGCTTCTCTAGTGAAAACGACTGTGTTGTCATTGCCTGTCGTTTTGCCGAAGAGCACAGGAAGGGCAGGTTGGAGGGGGGCTGGAGTTCTGGACAGTGGTCAGAAAAGAGCAGGGCCCAGTGCATGGTGGAGGAGCTAATGAACCTCTACAACAGTGCAGTTGCAGAAATTCTCATCTCAAATGACACAACAAGAGATCTCACCCCACTGAGATGCCACCAGAAACCAGACCATAAAGATTTTGAGGAGTTTAAAGCCAAATATTCTTTTCTTCTCCCCATGTCTCCTTACTTATCACATGTCTGTGAAGTTGAAGGTGTTCAAGAGGTAGATGAACCCACTGAAGTTTGGTCAGGAGAAGATGAAATCATTCAGGAAGAAGATGGTGAGCCACTCATCTTCTTCACATCTGTAATACAAAAAATGAAAGCTCTGGCAGAATCCAGAGACTATCACACACTGGCAAAACTGATCATTTCAGACGACATCCATCCTTCACTGCGTCCAATGGCAAAGGAGTTTCAGGACCTTCAAAAGAAGGCAGAGATTTTGAGATCTTGCACATCCTTGCAGTCAAGGTTGGGACACTTCCAATTGCAACTCAATGCATACACTTGCGCTTCTTCCCCCATGAGACGCTACCTTGACCTGATTCTTCAGAGACTTCTTCACAGTGTGCTCAGAGACGAGAAGGTGGACTACACAAAGTCAGAGATTGATCAGTTCTGTGACTCCAGTGTACAGCAGTTGGACTCTCTAAAAAATTACGACCTCCTAGTTTCAAAATTCAACACTGTTTCTAAATTTCGTTCCACAGTTGTGACCAAACTCGCAGTAGTAGACCAGCTTTCCTTAAGGGAACATAAATTTGAGATTTCACTTCCATTTGAACAAATGTCTGGGGACTTAACCATCATGTACAGACACCTAAAAGTTGTTGAGCAACCAGAGTGCAACCATGACAAGAAATCCATTACACTACACTGGAAGAGAAGAGTGTATTCATTCAGTGATGCTTTAAAAATCAAGCCTCAGTCTAAGTTCAATGAAAATGTGACCCTAATCACAGGTAGTAAGTGGAGACAAATTACATCTGCAGTTAAAGCTGAAGACTGGAAGAAGGTCAGAGTGTGCCttgaacatgtaaaaaaaacagcagcaaataGAAAAGACGAAAGACAGCAGAAAGTGACAAGTTCACAAGAGCACTTCAAGGAGTGTTACATGGAACTCAAGTTAGGAGAAGTGCTGCAAGTGCAGGTTGGGACAGATATCATAGACAGGATGACCACACCAACGGTGAAGCTCCTCTACATCAACCCATTCTTTGAAGTGTGTTTGGAACATGCAAGGAACCCGACCATGTGCTTTTCCAGAGATGTGTGCGACTCATCAAAGTCAGTGTACCAGGATTATAAAGAGTACCAGAAGATCTGGAGAAGGCTGTGTCAGATGGACACGGCTTACAATGCTGTGGAAGAAAATAACAGCGTAATCCTTCAAGATGTGGAAATAACCTGGACCACACAAGACAAGAAGAACGAGGAAAACCTCAAGGGTTTCTTCCAAATGACTCAGACACAGAAGAAAGAATGGCATCTGGAATTTGATCTGACAAACTGCTTTCTTTGTATCCGGTGGAAGGGTCAACATTTGGGGAAAGAggaagtgaaacaaaaaaaacatcacaatgGCTCTGGATTTCCTGACTTGGAGGATCCACTACCAATCACATGGGTCGCTCACGGTGTGGCCTTCAAATCCAAAAAAGAAGAGGACGAAgaggaaaacaataaacaatcaCACAACATCAAAATCCAATTTCAAATAAACCATCAGAGTATGACTGCCAATCCAAAGGAAATCTTTGACACGGGAACCAAGTTCACAGTAGAAGTAATCCCCAAAAAAATTCCATATATGCTAAGAGAAAATGCTGTGGCCAAAATAAAACACGCTAATGATCTGGTGAAAAGCATTGCCATTGGGAACATATCCAATGAACCTCTCAAAAGTGATCACCTACCTTCAGAGGATCACCAGACCCTGACTCTGCCACCGCTGAATAAAAGTCAGAACAGAGCTGTGCAAAAGGCTTTGCAAAATCCCTTCACTGTGATCCAAGGACCACCAGGTACTGGCAAAACTGTGGTTGGGCTTCATATTACCTATCAGTTCTacctgaaaaacaaaacatgccaaaaacacatgccaaaaaaacagaaagaagaacCAAAGAAGCGTGCCATCCTGTACTGCGGGCCCTCCAACAAGGCGGTGGATATTGTGGCAGAACAGCTGATGAACCTCAGAGGAGTCCTTAAACCTCTACGCATTTACTGTGATCAGATGGAGATGCGGGAATTCCCTTACCCTGGCAGTGACCTTAAGCTCTGTCGCAAATCTCTTCGTGATGAAAAGCCCAAGAAAAAACTCAGggACATTACACTGATGTACCTGATACGAGAACCCGAAAACCCTTTCTCGGAGGAGATCAAAGAATttgaaaaaattgaaaatgaacCGGAATTTGACTATGAAAGTTACAGAAAAGTACTGAAGCAGGCTCAGAGTTATGAGCTCAGGAAGCATGATGTTATCCTGTGCACCTGCTCGACTGCACTGAACCCAAACCTCATCAAGACCATGGACTTTCGACAGATCCTCATAGATGAATGCGCCATGGCCACGGAGCCTGAGGCCTTCATCCCACTGGTCTCTCATAAACCTGAGCAGATCGTGCTCCTTGGCGACCATAAGCAGGTTCGGCCAATCGTAGGCTGTGCTCGGGTGAAGGAGCTGGGCATGCAGACCTCTCTGTTTGAACGATATATGAAGGAGGCAGTGATGTTGGACACACAGTACAGAATgCATGAGAGTATCTGTGAGTTTCCCTCTAATGAGTTTTACAATGGCAAGCTGAGAACTGGAGCTCAGCGAGGACCTTGCCGCCTGCTGAACAACAAGAACAATCCGACAGCCATCCTGTTCGCTCACGTCCAGGGAGAGGAGGTCAGTCTGATCGTTTCAACGCCGACCGGCAACGAAAACTCTGTGTCCAATAAACTCGAGGCAGAGCAAGCGGTCCGTGTTGCTGATTTGTTGGTTCGTCAGTCTGGTGTGAAACCAGAAGACATAGCCATCCTGACTCCCTACAATGCACAGGTGTGTACAATCAAACAGCTGctggagaaaaagagtgagaagaGGGAAGACATGCAGGGGGTCACGGTCTGCACCATCATGAAGAGCCAAGggagTGAGTGGCCGTATGTGATAGTCTCCACAGTTCGCTCTTGTCCTCTGTCTGAGATTAAAAGCAGTAAGAACAAAGGGAGGATGGGGAAGAAACTCGGGTTCATTACGGACCCCAACCAGGTCAACGTCGCCATCACACGTGCACAGGATGGACTCTGCATTCTGGGTAATCGTCAGCTGTTGGAGTCCAGCCAGCTCTGGAAGAAACTGGTGTCTCATTATGAAAGACAGAACTGTGTGGTGAATTCAGCTGAAAATATAAAAGTTGACAATGTCAAGCACAGACATTGACTAGTGTACTCATTTCTGTGCTTATGTaaaggaatatatattttgtatctaaccatatatatattttatataatttttttctaatctattttattattcaagGACATAACATGCAGTATTGATCAAATGTTTGTGAGCCCCTTCCATAAAAATACAGCCATCACTGTAACACCTGAGCAAATGCACAAATACAGcttgtagagaagtactgccttCCAATAAAGATGAACCTATTTGCTCCATCCA

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction
ko04742 Taste transduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260233.3 True 5354 mRNA 0.43 12 1292789 1306241

Neighbor

gene id symbol gene type direction distance location
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 98043 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 139501 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 200622 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 221173 1048244 ~ 1071616 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 255855 1011639 ~ 1036934 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 134514 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 394596 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 503361 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 559151 1865392 ~ 1871930 (+)
mapk8ip1 mapk8ip1 coding downstream 576562 1882803 ~ 1948422 (+)
G39666 NA non-coding upstream 8344 1282321 ~ 1284445 (+)
G39665 NA non-coding upstream 12344 1279514 ~ 1280445 (+)
G39661 NA non-coding upstream 21561 1270591 ~ 1271228 (+)
G39629 NA non-coding upstream 65738 1225523 ~ 1227051 (+)
G39625 slc38a7,LOC107711584,LOC107596460,LOC107683258 non-coding upstream 73994 1216302 ~ 1218795 (+)
G39673 NA non-coding downstream 17640 1323881 ~ 1324207 (+)
G39662 arih1l,LOC108270676,LOC108439640,LOC107662282,LOC107685205,LOC107738728,LOC107736997,LOC107600711 non-coding downstream 20982 1327223 ~ 1334616 (+)
G39676 NA non-coding downstream 33582 1339823 ~ 1351454 (+)
G39698 NA non-coding downstream 122451 1428692 ~ 1429975 (+)
G39704 NA non-coding downstream 151997 1458238 ~ 1459551 (+)
LOC111192492 NA other upstream 24404 1265857 ~ 1268385 (+)
G39626 NA other upstream 72303 1219806 ~ 1220486 (+)
G39619 mrpl21 other upstream 83693 1206787 ~ 1209096 (+)
pdcd7 NA other upstream 247442 1038573 ~ 1045347 (+)
plekho2 NA other upstream 329505 922757 ~ 963284 (+)
LOC111192494 NA other downstream 104189 1410430 ~ 1413799 (+)
polr2l NA other downstream 114150 1420391 ~ 1427117 (+)
muc2 LOC108439647 other downstream 454986 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 1291451 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 2076401 3382642 ~ 3401938 (+)

Expression


Co-expression Network