sdhaf2 (sdhaf2,LOC107685224)


Basic Information

Item Value
gene id sdhaf2
gene name sdhaf2,LOC107685224
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1440755 ~ 1445223 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260235.3
CGCAGGGCAGGTGGAGCGTTCCTGAAAACGGGTGGGAAGGAAATAGCGCGTGCTGAACTCGAGCGTGTTGTGTTTGAGTCCTGCCAGCTGGATTTTACTGACTTTTACACTCGCGATGTTTTCTTCCGCACTGACAAGGAGAATGCTCTGTGCTGTTTGCCGGACGTCCCTTCGGTCTCCTGTCACAGCAGCAGTGGTGACCCGGGGGTACCGGGGTGATGCTCCAGAACCTAATCTGATAGAGATCCCCCTGCCGCCGTGGCAGGAGAGAAAAGACGAGTCTCTGGACATCAAGAGAAAGCGTCTGCTGTACGAGAGCCGAAAGAGAGGCATGCTGGAGAACTGCATCCTCCTCAGtatttttgctAAGCAGTATCTGGAGAGCATGAGTGAAGCTCAGCTCCGTCAGTATGACAGGCTCATCAATGAGCCGAGCAACGACTGGGACATCTACTACTGGGCTACAGAAGCGATGCCGACTCCAGATGTGTATCAGGGAGATGTAATGGATCTGCTGAAGGAGTTcacaaaaaacagacagatgGAGCAGAGGCTGGATGCACCAAACCTGGAGTACCTCGATAAAAGCCAGTGAAGCCTGTCAACTTACTGTCCTGTCAACTCCAGGGGGTGCCAGTACAAGGTTAAGATGCCTTGCCAATCAGAACCCTATTAAAGGGGTAGTTTGGACAAATATGTTAAAAGGAATATGCTAAATAGCATAatgagctaatgctaattgaTGGCTACTAGCTTCTGTTTCTTATTAGCAGCATTTAGCATATTTGGCCAAATTGTTCCTTAATGCTCACATTTGTCAACAAAATGCAgatcagttaaaaaataaattaatcctGTTTTAGATTAAAGGAATGTGTAAATCTGTGTGACTGCTCTGAGCTGAGTGGTGCAGTTTCGCTGTTGATATCTGAGAGAAAGTGACTATTataattcttattatttcttttattgattGTGTACAGTAGTTATGATATGAAACTATATAGTAGTATATTAAAAGGTATGCTTATCAATGA

Function

symbol description
sdhaf2 Predicted to be involved in aerobic respiration; mitochondrial respiratory chain complex II assembly; and protein-FAD linkage. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in paraganglioma. Orthologous to human SDHAF2 (succinate dehydrogenase complex assembly factor 2).

NR:

description
PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial

GO:

id name namespace
GO:0006121 mitochondrial electron transport, succinate to ubiquinone biological_process
GO:0018293 protein-FAD linkage biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K18168 SDHAF2, SDH5; succinate dehydrogenase assembly factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260235.3 True 1037 mRNA 0.45 4 1440755 1445223

Neighbor

gene id symbol gene type direction distance location
LOC103026058 NA coding upstream 134514 1292789 ~ 1306241 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 246009 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 287467 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 348588 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 369139 1048244 ~ 1071616 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 255614 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 364379 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 420169 1865392 ~ 1871930 (+)
mapk8ip1 mapk8ip1 coding downstream 437580 1882803 ~ 1948422 (+)
LOC111192498 lrp4 coding downstream 673420 2118643 ~ 2235758 (+)
G39698 NA non-coding upstream 10780 1428692 ~ 1429975 (+)
G39676 NA non-coding upstream 89301 1339823 ~ 1351454 (+)
G39662 arih1l,LOC108270676,LOC108439640,LOC107662282,LOC107685205,LOC107738728,LOC107736997,LOC107600711 non-coding upstream 106139 1327223 ~ 1334616 (+)
G39673 NA non-coding upstream 116548 1323881 ~ 1324207 (+)
LOC111192495 NA non-coding upstream 140928 1298971 ~ 1299827 (+)
G39704 NA non-coding downstream 13015 1458238 ~ 1459551 (+)
G39717 NA non-coding downstream 143939 1589162 ~ 1589972 (+)
G39718 NA non-coding downstream 151197 1596420 ~ 1684465 (+)
G39724 NA non-coding downstream 208224 1653447 ~ 1653820 (+)
G39816 NA non-coding downstream 274646 1719869 ~ 1721930 (+)
polr2l NA other upstream 13638 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 26956 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 172370 1265857 ~ 1268385 (+)
G39626 NA other upstream 220269 1219806 ~ 1220486 (+)
G39619 mrpl21 other upstream 231659 1206787 ~ 1209096 (+)
muc2 LOC108439647 other downstream 316004 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 1152469 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 1937419 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 2216452 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 2392284 3837507 ~ 3856474 (+)

Expression


Co-expression Network