rplp2 (rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883)


Basic Information

Item Value
gene id rplp2
gene name rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1700837 ~ 1705998 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260240.2
GCAACTCTCTGCTTCGGCGTGACGTCAGCGTCAGTGCTGGTTTTCCCGGTTTCCGGTCCTCTGCTCTTCCTTTTCCGTTTGCTGGTGATCGGTGTTGGAGTGCGAGAATGCGTTACGTTGCTGCTTACCTGCTTGCCGCCCTTTCGGGCAAAGACAACCCCAGCTCCAATGACATCAAGAAGATCCTGGAGAGCGTTGGTATTGAGGTCGATGAGACCCGCATGGGCAAGGTTGTGTCTGAGCTCAACGGCAAGAAAGTGGAGGATGTGATTGCCCAAGGCTACGGTAAACTTGCCAGCGTGCCATCCGGTGGTGCAGTGGCTGTGGCCAGCTCTGCTGCccctgctgctggaggagctgcagcacCTGCAGctgcagaggagaagaaggaagagaagaaggaggagtCTGAGGAGTCCGATGATGACATGGGATTCGGACTGTTCGACTAAACTGTTTCTTGGggccaaaataaaaaactgttaaa

Function

symbol description
rplp2l Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPLP2 (ribosomal protein lateral stalk subunit P2).
rplp2 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within cytoplasmic translational elongation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in female organism. Orthologous to human RPLP2 (ribosomal protein lateral stalk subunit P2).

NR:

description
PREDICTED: 60S acidic ribosomal protein P2

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02943 RP-LP2, RPLP2; large subunit ribosomal protein LP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260240.2 True 487 mRNA 0.54 5 1700837 1705998

Neighbor

gene id symbol gene type direction distance location
sdhaf2 sdhaf2,LOC107685224 coding upstream 255614 1440755 ~ 1445223 (+)
LOC103026058 NA coding upstream 394596 1292789 ~ 1306241 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 506091 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 547549 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 608670 1082551 ~ 1092167 (+)
LOC103030943 NA coding downstream 103604 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 159394 1865392 ~ 1871930 (+)
mapk8ip1 mapk8ip1 coding downstream 176805 1882803 ~ 1948422 (+)
LOC111192498 lrp4 coding downstream 412645 2118643 ~ 2235758 (+)
LOC103031990 NA coding downstream 676055 2382053 ~ 2388088 (+)
G39718 NA non-coding upstream 16372 1596420 ~ 1684465 (+)
G39724 NA non-coding upstream 47017 1653447 ~ 1653820 (+)
G39717 NA non-coding upstream 110865 1589162 ~ 1589972 (+)
G39704 NA non-coding upstream 241286 1458238 ~ 1459551 (+)
G39698 NA non-coding upstream 270862 1428692 ~ 1429975 (+)
G39816 NA non-coding downstream 13871 1719869 ~ 1721930 (+)
LOC111192493 NA non-coding downstream 21166 1727164 ~ 1727655 (+)
LOC111192496 NA non-coding downstream 97669 1803667 ~ 1806941 (+)
G39825 tollip,LOC107675413,LOC107550182 non-coding downstream 133505 1839503 ~ 1841649 (+)
G39838 NA non-coding downstream 151338 1857336 ~ 1891140 (+)
polr2l NA other upstream 273720 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 287038 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 432452 1265857 ~ 1268385 (+)
G39626 NA other upstream 480351 1219806 ~ 1220486 (+)
G39619 mrpl21 other upstream 491741 1206787 ~ 1209096 (+)
muc2 LOC108439647 other downstream 55229 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 891694 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 1676644 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 1955677 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 2131509 3837507 ~ 3856474 (+)

Expression


Co-expression Network