LOC103026778


Basic Information

Item Value
gene id LOC103026778
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14711374 ~ 14725957 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603319.2
ACAGATACTTAAAGAATGTTCTCCACTAAAGGAAACCACAAGTGAACAGGTGCTCCACCATCACCGCTCCTCGTTTTCATCTCCTTTTAACTACAACCCTTCTCAAAACAGCAGCATGTCCTTCTCCGGCAGATCCTATGGAAACAGGACTCAAAGCATGTACGGAGGAGCTGGGGGTCAGGGAACCCGTATCTCAACTACCCAGCAAGGGTCGCCCTACGCGTCTCTACGGGGCTTCAATCTCGCCGATGGCCTCGATCTTCACACTTCAAGAAATGAGAAGGCCACCATGCAGAACCTGAACGACCGTCTGGCTTCTTATATGCAGAATGTGCAATCTCTGGAGAAGAGAAACGCTGAGCTGGAGCAGAAGATCAGGGACTGGTATGAAAGTCATTCTGTGGTCTTCCGTGATCACAGTGACTTCTTGGAAAAGGTCAAGGATTTGAGAGACCAGATTGAGTACCTCTCTATGTGCAATACCAAGACCGTACTGGACATCGATAACTCCAATCTGGTGGCTGAAGATTTCAGAATCAAGTATGAAACAGAGCGGAACCTGCGTACCGCAGTGGAGGCGGACACCACCTGCATCAGGTCGGTTCTAGATCAAATGGTTTTTACCCGATCAGATTTGGAGCAGAAGTATGaggacctgaaagaggaactggcCATGCTTGAGAAAAACCATGAAGAGGAGATGGCTCTGGCTCGTGAGCAGACTTCACAGGTGAACGTGTCTGTGGATGCAGCGCCCTCTGCGGATCTGAACGAGGCTTTGACAGAGGTCAGACAGTACTATGAGAACGTGACTGCCAGAAACCGCAGTGACCTGGAGAACTGGTACCAAAACAAGATTTCCACAATGGAGGAGCAACATGACACACACAACGAAGAGCTGCAGAACACCAAAGAGGAACTTAAAGAGCTAAAGAGCACCTTCCAGAGGCTACAGATTGAACTGCAGACCCACCACAATATGagaACATCTAATGAGGAAACATTACGAGACACTGAGGATCAGTTTACTGAGCAGCTGTCAAAGCTGCAGAAGACCATTGATAGCCTGGAGCTCCAACTCAAAAATATCCACACTGAGATGGCCAATAACAAACTGGACTATGACATCCTGCTCAACCTTAAAAGCCATCTGGAGACTGAGATCACAGAGTacaggctgctgctggaggCAGAAGACAGgtctcgctgctgggtggtggtgtggggtaactaaaagctaag
>XM_022669679.1
CAGATACTTAAAGAATGTTCTCCACTAAAGGAAACCACAAGTGAACAGGTGCTCCACCATCACCGCTCCTCGTTTTCATCTCCTTTTAACTACAACCCTTCTCAAAACAGCAGCATGTCCTTCTCCGGCAGATCCTATGGAAACAGGACTCAAAGCATGTACGGAGGAGCTGGGGGTCAGGGAACCCGTATCTCAACTACCCAGCAAGGGTCGCCCTACGCGTCTCTACGGGGCTTCAATCTCGCCGATGGCCTCGATCTTCACACTTCAAGAAATGAGAAGGCCACCATGCAGAACCTGAACGACCGTCTGGCTTCTTATATGCAGAATGTGCAATCTCTGGAGAAGAGAAACGCTGAGCTGGAGCAGAAGATCAGGGACTGGTATGAAAGTCATTCTGTGGTCTTCCGTGATCACAGTGACTTCTTGGAAAAGGTCAAGGATTTGAGAGACCAGATTGAGTACCTCTCTATGTGCAATACCAAGACCGTACTGGACATCGATAACTCCAATCTGGTGGCTGAAGATTTCAGAATCAAGTATGAAACAGAGCGGAACCTGCGTACCGCAGTGGAGGCGGACACCACCTGCATCAGGTCGGTTCTAGATCAAATGGTTTTTACCCGATCAGATTTGGAGCAGAAGTATGaggacctgaaagaggaactggcCATGCTTGAGAAAAACCATGAAGAGGAGATGGCTCTGGCTCGTGAGCAGACTTCACAGGTGAACGTGTCTGTGGATGCAGCGCCCTCTGCGGATCTGAACGAGGCTTTGACAGAGGTCAGACAGTACTATGAGAACGTGACTGCCAGAAACCGCAGTGACCTGGAGAACTGGTACCAAAACAAGATTTCCACAATGGAGGAGCAACATGACACACACAACGAAGAGCTGCAGAACACCAAAGAGGAACTTAAAGAGCTAAAGAGCACCTTCCAGAGGCTACAGATTGAACTGCAGACCCACCACAATATGagaACATCTAATGAGGAAACATTACGAGACACTGAGGATCAGTTTACTGAGCAGCTGTCAAAGCTGCAGAAGACCATTGATAGCCTGGAGCTCCAACTCAAAAATATCCACACTGAGATGGCCAATAACAAACTGGACTATGACATCCTGCTCAACCTTAAAAGCCATCTGGAGACTGAGATCACAGAGTacaggctgctgctggaggCAGAAGACAGCGAGCCTCAGGTTGTTCACAAAACGAATCAAGAGGAAGAGCCACCTGTGGATGACAAAGTCGTGGAACCCAGCGAAACAGAAACTACGGAAGACTGACAGATTTATAATTTACTCACTTTAAGCTTTAAATCCTTCCTCTGATTCCACTGAATCAGTTAGCACTGCTGtccttttgttttttcaatGAAACACCAACTCGTAAATGTCACATAAATTTAGTTGTATTGAGGATGTATTTAGGTGTTcagttatacaaaaaaaatgcaatgggAAAGTAAATGCTAATACTTTGCCATtgattagattttatattaacgTTATATGTATACtgtttattgtatgtattttgGCAAACTGAATATATGTGTTTCTATCATTGAGCCTTTCTATAGCATTTCTATAACAccgtaaaaataaaaacgttgAGAAAACTTAAGGCAA
>XM_022669680.1
ACAGATACTTAAAGAATGTTCTCCACTAAAGGAAACCACAAGTGAACAGGTGCTCCACCATCACCGCTCCTCGTTTTCATCTCCTTTTAACTACAACCCTTCTCAAAACAGCAGCATGTCCTTCTCCGGCAGATCCTATGGAAACAGGACTCAAAGCATGTACGGAGGAGCTGGGGGTCAGGGAACCCGTATCTCAACTACCCAGCAAGGGTCGCCCTACGCGTCTCTACGGGGCTTCAATCTCGCCGATGGCCTCGATCTTCACACTTCAAGAAATGAGAAGGCCACCATGCAGAACCTGAACGACCGTCTGGCTTCTTATATGCAGAATGTGCAATCTCTGGAGAAGAGAAACGCTGAGCTGGAGCAGAAGATCAGGGACTGGTATGAAAGTCATTCTGTGGTCTTCCGTGATCACAGTGACTTCTTGGAAAAGGTCAAGGATTTGAGAGACCAGATTGAGTACCTCTCTATGTGCAATACCAAGACCGTACTGGACATCGATAACTCCAATCTGGTGGCTGAAGATTTCAGAATCAAGTATGAAACAGAGCGGAACCTGCGTACCGCAGTGGAGGCGGACACCACCTGCATCAGGTCGGTTCTAGATCAAATGGTTTTTACCCGATCAGATTTGGAGCAGAAGTATGaggacctgaaagaggaactggcCATGCTTGAGAAAAACCATGAAGAGGAGATGGCTCTGGCTCGTGAGCAGACTTCACAGGTGAACGTGTCTGTGGATGCAGCGCCCTCTGCGGATCTGAACGAGGCTTTGACAGAGGTCAGACAGTACTATGAGAACGTGACTGCCAGAAACCGCAGTGACCTGGAGAACTGGTACCAAAACAAGATTTCCACAATGGAGGAGCAACATGACACACACAACGAAGAGCTGCAGAACACCAAAGAGGAACTTAAAGAGCTAAAGAGCACCTTCCAGAGGCTACAGATTGAACTGCAGACCCACCACAATATGagaACATCTAATGAGGAAACATTACGAGACACTGAGGATCAGTTTACTGAGCAGCTGTCAAAGCTGCAGAAGACCATTGATAGCCTGGAGCTCCAACTCAAAAATATCCACACTGAGATGGCCAATAACAAACTGGACTATGACATCCTGCTCAACCTTAAAAGCCATCTGGAGACTGAGATCACAGAGTacaggctgctgctggaggCAGAAGACAGaaGGCTCTGCGGTTTATAATGCGTGTTATGCGACACTtgtaaggaacagaggtgttgccatgttttcctttttattcagcaggtctcgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603319.2 False 1242 mRNA 0.49 7 14711374 14724638
XM_022669679.1 True 1641 mRNA 0.45 8 14711375 14725957
XM_022669680.1 False 1289 mRNA 0.48 7 14711374 14724603

Neighbor

gene id symbol gene type direction distance location
LOC103026177 fgf22,LOC106613753,LOC106584266 coding upstream 51349 14622178 ~ 14660025 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding upstream 177204 14483941 ~ 14534170 (+)
bsg NA coding upstream 230920 14462650 ~ 14480454 (+)
LOC103041829 NA coding upstream 299339 14359209 ~ 14412035 (+)
LOC103042131 LOC108424984 coding upstream 366194 14334095 ~ 14345180 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding downstream 108267 14834224 ~ 14868739 (+)
LOC103022023 NA coding downstream 246304 14972261 ~ 14994616 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 319317 15045274 ~ 15051775 (+)
rtel1 rtel1,LOC107579445 coding downstream 336670 15062627 ~ 15089931 (+)
zgpat zgpat coding downstream 365414 15091371 ~ 15097213 (+)
G42571 LOC103031381 non-coding upstream 22621 14685299 ~ 14688753 (+)
G42564 NA non-coding upstream 42091 14627857 ~ 14669283 (+)
LOC111192557 NA non-coding upstream 151005 14538321 ~ 14560369 (+)
G42521 NA non-coding upstream 297628 14412289 ~ 14413746 (+)
G42527 NA non-coding upstream 333344 14377478 ~ 14378030 (+)
G42583 NA non-coding downstream 2503 14728460 ~ 14733285 (+)
G42579 NA non-coding downstream 15317 14741274 ~ 14749183 (+)
G42590 NA non-coding downstream 39749 14765706 ~ 14768714 (+)
G42599 cdc6,LOC107753851,LOC107718871,LOC102777898 non-coding downstream 144399 14870356 ~ 14877360 (+)
G42600 NA non-coding downstream 153062 14879019 ~ 14881077 (+)
eps15l1 eps15l1 other upstream 576828 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 854013 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1089332 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1189117 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 1260897 13448592 ~ 13450477 (+)
G42605 NA other downstream 169105 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1252529 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1714974 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2090644 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2222423 16948380 ~ 16950360 (+)

Expression


Co-expression Network