LOC103034435


Basic Information

Item Value
gene id LOC103034435
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13617083 ~ 13622042 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603321.2
TCGGTAGGTGGCGGTATGGCACCTGTAGTTGGTCTGCCAGCCGCCATTAAATCCAATAGAAGAAGAGCccactcagcagcagcagccgtaTTATTATAACAGAGATTTCTCTGCTGAAGaaAGTAATGATCTCCTGTTGCTGGTACACATTTAGTTCCACAAATGCAAAGAATCTTCATCAAGAAGAACTATTAAAACTGGAAGATTCAGAATGAGAGAATATGATGTCGATAGACTCCAGTACCCTAAAAACATTCCCTGCTACTCAACACACCAATGCATCTCCTGGACAAACTAAAGAGAAATCTCACCAGTGCTCTGAGTGTGGAAAGTGGTTTACTAGTCAGTGTATTCTCCAAACACACCAGcgtgttcacactggagagaaacccttTCACTGCTCagtctgtgggaagagttttagtcagCAGGGTAGTCTCcgaacacaccagcgcattcacactggagaaaaaccttatgagtgctcagactgtgggaaacgTTTTAATCAGCAGGGTCATCTCCAATTACACCAGtgtattcacactggagaggAACCGTATTattgctcagagtgtgggaagagttttagtgcGAGAGGTTCCCTGacaaaacaccagcgcattcacactggagagaaaccgtatcactgtttaGAGTGTGGAAAGAAATTTAGACTGAGTGGTGCCCTCacaaaacaccagcgcattcacactggagagaaaccatatcagtgctcagagtgtggaaagtGTTTTACTACACAATGTAAGCTTCAGGCACACCAGCGAATTCACACCGGAGATAAACCTTACCTCTGCTTGGAATGTGGGAAAAGTTTTGGTACACAGGGAAATCTGCTaaaacatcagcgcattcacactggcgagaaaccatatcactgttcATATTGTAGGAAGAGCTTCAATCACCAGGTTTCTCTGCAaaaacatcagcgcattcacactggagagaaaccacatTCCTGCTTAGCGTGTGGAAAGAGGTTTAGAGAAAGGCATACCCTGATggtacaccagcgcattcacactggagaaaggCCGTATCAGTGTTCCAAGTGTGACAAGAGTTTTAAACACCAGATTTCTCTACGAATACATCagctcattcacactggagagaaaccgttttcTTGCTCAGAATGTGGGAAGGGTTTTCGAGAGAGAGGTTCCCTGATtgtgcaccagcgcattcacagtggagagaaaccgtatccctgctcagagtgtgggaaaaCTTTTAGAGTGAGTGGTTCCCTTataaaacaccagcgcattcacactggagataAACCATATCACTGTTCGGAGTGTAAAAAAGGTTTTACCACACAGTGTTCTCTCCAAAATCACCTGCGCAGTCACACTGGAGAGACACCTCATCGCTGTTTGGAGTGTGGGAAAAGTTTTAGTACACACGGTAATCTTCAAATTCACCAGAGCATTCACaatggagagaaaccgtatcactgctcagttTGTGGGAAAAGTTTTAGTCAGAAGGGTAATCTTCAAACTCACCAACGTGTTCACAcgggagagaaaccgtatcagtgcacagactgtgggaagagttttagtcagCAGGGTCCTTTtcaaatacaccagcgcattcacactggagagaaaccctaTCAATGCTTGGAGTGTGGTAAGAGTTTTAGGGACAGAAGTAGTCAAAAGTATCATAAGCGCATTCACCAAAGAACAAATCAGTAATATTCCTCTGATTTTCAGTTTTAAATTCAGATACTTACAAATATGTTTGGCAgtaaaataataagacattttttatttatatggcaCCTTCTCTAAGAGCTCAAAGCACTTAAAAACATTAGGTAAAAACAGATTGTGTTGTCATTTTGGAATTTGTGCTATGTTTTACAACCTCTTTTTTCCAAGGCAGTAATgaattgggttttttttttttcgtcaaaAAATTGCAGTCATACTGCAGTAATCATATAAACATAGAGCACACATATTTTGTATACATCATTATAATTGAATTCAGTTCACTTCAAATCTATTTATATTGTGCTTTTTACAATAGATGTTCTCACAAAGAAGCTTTACAGAGATCCAGATCCAAGCCTCCATTAAGAAATGCAATGGCAGTTGCAAGACTTAAGAAAACTTACTTTTCTTTAGAATTATTTGATtcataatgaaaagaaaatcctATAATCGCTGTGTATTAATTTGTATGGGTTTCCTCTGTTCTGTGTAGAGATGATTAACCTTTCAACATATTTGTAAGAATGCATTCAGAATAAACATAACACTTGTGAACTGGCCAGATGAAGATTGTGTTTTTAGTGAATGATATCTTCAGAGAAGAAATCATTCAGGATTGTGGACCTTTCAAGAGTCAGAACCTTAATCACCTTCTGCTGTGATATGAGGGACTAAAGTTAAGAGGCTTTTCTGGCACACCAACAATGTACAATGTACAAAAGTACACAGTGGAGTAATATTATATTCTCCTGGCACCATGGTACAACATGGAGAAACACAAGACCTGTTTAAAGCATCCTACTTAAGTACATAAAGGTGAGATAAGTTGAATCGTTTTCACTGAGTAAATGTTCCAGGaatctttattttcatttaataatactcccatcaccatgtttaaaagctactctttttttacctattttaaTCACCTTTAAGTCTAACTGTGcagactttattttaaaaaatgcctGCACTTTCTACAtggttcattttaaatgttataaacatGTTCACTGAATGCTGTGTGTTTATACAGGCTGACTAGGCTTTTCCATTTCCTCATATTGATCATCACCTGGAAGAACAGGACAAATCTCAACAAGAAGTTACTGGGTGTAAGGGCTAGAAACTGTGTTCTACACAGTGCAAAGCTCAGAACACCAGACCAGAAGATACCATCCTGAAGAATGTCATGTGTGGGTACACACACCCCAATAGCTTGTGATTACAGATGGTATAGTACCACCTTTTCCAGTGCCAGTGTGGAAACCTCGATCATTGACTCACTGTTTAAATACCTGTGGCTTCGGTTATCACATGGTCTTCTTTGTCTTGCTTCCTGTTCTGCTACAAACAGTTCTGTGATATTGAGAACACACAACCTGCctttaatgttttatctaaATTCTGTTCAGTGCTTTTGATGCCaaagtgatatttttttcttttgatagttaatgttaattctgtttttttatgtttgggtTTGTACTGTCATGCTTGACCAGCTAAAGTAGGGCCACTCaaagctgtaaataaaaataatgcatggAATGAA
>XM_022669630.1
TCGGTAGGTGGCGGTATGGCACCTGTAGTTGGTCTGCCAGCCGCCATTAAATCCAATAGAAGAAGAGCccactcagcagcagcagccgtaTTATTATAACAGAGATTTCTCTGCTGAAGaaAGTAATGATCTCCTGTTGCTGGTACACATTTAGTTCCACAAATGCAAAGAATCTTCATCAAGAAGAACTATTAAAACTGGAAGATTCAGAATGAGAGAATATGATGTCGATAGACTCCAGTACCCTAAAAACATTCCCTGCTACTCAACACACCAATGCATCTCCTGGACAAACTAAAGAGAAATCTCACCAGTGCTCTGAGTGTGGAAAGTGGTTTACTAGTCAGTGTATTCTCCAAACACACCAGcgtgttcacactggagagaaacccttTCACTGCTCagtctgtgggaagagttttagtcagCAGGGTAGTCTCcgaacacaccagcgcattcacactggagaaaaaccttatgagtgctcagactgtgggaaacgTTTTAATCAGCAGGGTCATCTCCAATTACACCAGtgtattcacactggagaggAACCGTATTattgctcagagtgtgggaagagttttagtgcGAGAGGTTCCCTGacaaaacaccagcgcattcacactggagagaaaccgtatcactgtttaGAGTGTGGAAAGAAATTTAGACTGAGTGGTGCCCTCacaaaacaccagcgcattcacactggagagaaaccatatcagtgctcagagtgtggaaagtGTTTTACTACACAATGTAAGCTTCAGGCACACCAGCGAATTCACACCGGAGATAAACCTTACCTCTGCTTGGAATGTGGGAAAAGTTTTGGTACACAGGGAAATCTGCTaaaacatcagcgcattcacactggcgagaaaccatatcactgttcATATTGTAGGAAGAGCTTCAATCACCAGGTTTCTCTGCAaaaacatcagcgcattcacactggagagaaaccacatTCCTGCTTAGCGTGTGGAAAGAGGTTTAGAGAAAGGCATACCCTGATggtacaccagcgcattcacactggagaaaggCCGTATCAGTGTTCCAAGTGTGACAAGAGTTTTAAACACCAGATTTCTCTACGAATACATCagctcattcacactggagagaaaccgttttcTTGCTCAGAATGTGGGAAGGGTTTTCGAGAGAGAGGTTCCCTGATtgtgcaccagcgcattcacagtggagagaaaccgtatccctgctcagagtgtgggaaaaCTTTTAGAGTGAGTGGTTCCCTTataaaacaccagcgcattcacactggagataAACCATATCACTGTTCGGAGTGTAAAAAAGGTTTTACCACACAGTGTTCTCTCCAAAATCACCTGCGCAGTCACACTGGAGAGACACCTCATCGCTGTTTGGAGTGTGGGAAAAGTTTTAGTACACACGGTAATCTTCAAATTCACCAGAGCATTCACaatggagagaaaccgtatcactgctcagttTGTGGGAAAAGTTTTAGTCAGAAGGGTAATCTTCAAACTCACCAACGTGTTCACAcgggagagaaaccgtatcagtgcacagactgtgggaagagttttagtcagCAGGGTCCTTTtcaaatacaccagcgcattcacactggagagaaaccctaTCAATGCTTGGAGTGTGGCTGACTAGGCTTTTCCATTTCCTCATATTGATCATCACCTGGAAGAACAGGACAAATCTCAACAAGAAGTTACTGGGTGTAAGGGCTAGAAACTGTGTTCTACACAGTGCAAAGCTCAGAACACCAGACCAGAAGATACCATCCTGAAGAATGTCATGTGTGGGTACACACACCCCAATAGCTTGTGATTACAGATGGTATAGTACCACCTTTTCCAGTGCCAGTGTGGAAACCTCGATCATTGACTCACTGTTTAAATACCTGTGGCTTCGGTTATCACATGGTCTTCTTTGTCTTGCTTCCTGTTCTGCTACAAACAGTTCTGTGATATTGAGAACACACAACCTGCctttaatgttttatctaaATTCTGTTCAGTGCTTTTGATGCCaaagtgatatttttttcttttgatagttaatgttaattctgtttttttatgtttgggtTTGTACTGTCATGCTTGACCAGCTAAAGTAGGGCCACTCaaagctgtaaataaaaataatgcatggAATGAA
>XR_002649939.1
TCGGTAGGTGGCGGTATGGCACCTGTAGTTGGTCTGCCAGCCGCCATTAAATCCAATAGAAGAAGAGCccactcagcagcagcagccgtaTTATTATAACAGAGATTTCTCTGCTGAAGaaAGTAATGATCTCCTGTTGCTGGTACACATTTAGTTCCACAAATGCAAAGAATCTTCATCAAGAAGAACTATTAAAACTGGAAGATTCAGAATGAGAGAATATGATGTCGATAGACTCCAGTACCCTAAAAACATTCCCTGCTACTCAACACACCAATGCATCTCCTGGACAAACTAAAGAGAAATCTCACCAGTGCTCTGAGTGTGGAAAGTGGTTTACTAGTCAGTGTATTCTCCAAACACACCAGcgtgttcacactggagagaaacccttTCACTGCTCagtctgtgggaagagttttagtcagCAGGGTAGTCTCcgaacacaccagcgcattcacactggagaaaaaccttatgagtgctcagactgtgggaaacgTTTTAATCAGCAGGGTCATCTCCAATTACACCAGtgtattcacactggagaggAACCGTATTattgctcagagtgtgggaagagttttagtgcGAGAGGTTCCCTGacaaaacaccagcgcattcacactggagagaaaccgtatcactgtttaGAGTGTGGAAAGAAATTTAGACTGAGTGGTGCCCTCacaaaacaccagcgcattcacactggagagaaaccatatcagtgctcagagtgtggaaagtGTTTTACTACACAATGTAAGCTTCAGGCACACCAGCGAATTCACACCGGAGATAAACCTTACCTCTGCTTGGAATGTGGGAAAAGTTTTGGTACACAGGGAAATCTGCTaaaacatcagcgcattcacactggcgagaaaccatatcactgttcATATTGTAGGAAGAGCTTCAATCACCAGGTTTCTCTGCAaaaacatcagcgcattcacactggagagaaaccacatTCCTGCTTAGCGTGTGGAAAGAGGTTTAGAGAAAGGCATACCCTGATggtacaccagcgcattcacactggagaaaggCCGTATCAGTGTTCCAAGTGTGACAAGAGTTTTAAACACCAGATTTCTCTACGAATACATCagctcattcacactggagagaaaccgttttcTTGCTCAGAATGTGGGAAGGGTTTTCGAGAGAGAGGTTCCCTGATtgtgcaccagcgcattcacagtggagagaaaccgtatccctgctcagagtgtgggaaaaCTTTTAGAGTGAGTGGTTCCCTTataaaacaccagcgcattcacactggagataAACCATATCACTGTTCGGAGTGTAAAAAAGGTTTTACCACACAGTGTTCTCTCCAAAATCACCTGCGCAGTCACACTGGAGAGACACCTCATCGCTGTTTGGAGTGTGGGAAAAGTTTTAGTACACACGGTAATCTTCAAATTCACCAGAGCATTCACaatggagagaaaccgtatcactgctcagttTGTGGGAAAAGTTTTAGTCAGAAGGGTAATCTTCAAACTCACCAACGTGTTCACAcgggagagaaaccgtatcagtgcacagactgtgggaagagttttagtcagCAGGGTCCTTTtcaaatacaccagcgcattcacactggagagaaaccctaTCAATGCTTGGAGTGTGGTAAGAGTTTTAGGGACAGAAGTAGTCAAAAGTATCATAAGCGCATTCACCAAAGAACAAATCAGTAATATTCCTCTGATTTTCAGTTTTAAATTCAGATACTTACAAATATGTTTGGCAgtaaaataataagacattttttatttatatggcaCCTTCTCTAAGAGCTCAAAGCACTTAAAAACATTAGGTAAAAACAGATTGTGTTGTCATTTTGGAATTTGTGCTATGTTTTACAACCTCTTTTTTCCAAGGCAGTAATgaattgggttttttttttttcgtcaaaAAATTGCAGTCATACTGCAGTAATCATATAAACATAGAGCACACATATTTTGTATACATCATTATAATTGAATTCAGTTCACTTCAAATCTATTTATATTGTGCTTTTTACAATAGATGTTCTCACAAAGAAGCTTTACAGAGATCCAGATCCAAGCCTCCATTAAGAAATGCAATGGCAGTTGCAAGACTTAAGAAAACTTACTTTTCTTTAGAATTATTTGATtcataatgaaaagaaaatcctATAATCGCTGTGTATTAATTTGTATGGGTTTCCTCTGTTCTGTGTAGAGATGATTAACCTTTCAACATATTTGTAAGAATGCATTCAGAATAAACATAACACTTGTGAACTGGCCAGATGAAGATTGTGTTTTTAGTGAATGATATCTTCAGAGAAGAAATCATTCAGGATTGTGGACCTTTCAAGAGTCAGAACCTTAATCACCTTCTGCTGTGATATGAGGGACTAAAGTTAAGAGGCTTTTCTGGCACACCAACAATGTACAATGTACAAAAGTACACAGTGGAGTAATATTATATTCTCCTGGCACCATGGTACAACATGGAGAAACACAAGACCTGTTTAAAGCATCCTACTTAAGTACATAAAGGCTGACTAGGCTTTTCCATTTCCTCATATTGATCATCACCTGGAAGAACAGGACAAATCTCAACAAGAAGTTACTGGGTGTAAGGGCTAGAAACTGTGTTCTACACAGTGCAAAGCTCAGAACACCAGACCAGAAGATACCATCCTGAAGAATGTCATGTGTGGGTACACACACCCCAATAGCTTGTGATTACAGATGGTATAGTACCACCTTTTCCAGTGCCAGTGTGGAAACCTCGATCATTGACTCACTGTTTAAATACCTGTGGCTTCGGTTATCACATGGTCTTCTTTGTCTTGCTTCCTGTTCTGCTACAAACAGTTCTGTGATATTGAGAACACACAACCTGCctttaatgttttatctaaATTCTGTTCAGTGCTTTTGATGCCaaagtgatatttttttcttttgatagttaatgttaattctgtttttttatgtttgggtTTGTACTGTCATGCTTGACCAGCTAAAGTAGGGCCACTCaaagctgtaaataaaaataatgcatggAATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603321.2 True 3321 mRNA 0.40 2 13617083 13622042
XM_022669630.1 False 2193 mRNA 0.44 3 13617083 13622042
XR_002649939.1 False 3098 misc_RNA 0.40 3 13617083 13622042

Neighbor

gene id symbol gene type direction distance location
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding upstream 4671 13592628 ~ 13612412 (+)
LOC103024927 NA coding upstream 26666 13562232 ~ 13590417 (+)
LOC103033790 LOC103033790,LOC108429474 coding upstream 57453 13552912 ~ 13559630 (+)
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding upstream 152038 13453618 ~ 13465045 (+)
patj patj,LOC107715056,LOC108245549 coding upstream 251762 13162062 ~ 13365321 (+)
trmt13 trmt13 coding downstream 44360 13666402 ~ 13673565 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding downstream 72814 13694856 ~ 13700883 (+)
cdc14a cdc14a coding downstream 88004 13710046 ~ 13793719 (+)
gpr88 gpr88 coding downstream 179426 13801468 ~ 13805106 (+)
slc30a7 slc30a7,LOC107588064 coding downstream 239675 13861717 ~ 13891132 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 81057 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 141247 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 245278 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 250223 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 259853 13356659 ~ 13357230 (+)
G42389 NA non-coding downstream 376878 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 399601 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 434556 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 464867 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 538363 14160405 ~ 14160711 (+)
LOC103032215 NA other upstream 94826 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 166606 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 902055 12705559 ~ 12715028 (+)
G42068 NA other upstream 983654 12632816 ~ 12633429 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 1276170 12334344 ~ 12340913 (+)
LOC103037142 LOC108429501 other downstream 188791 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 448381 14070423 ~ 14134546 (+)
G42605 NA other downstream 1273020 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 2356444 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2818889 16440931 ~ 16446287 (+)

Expression


Co-expression Network