LOC103027567 (LOC108438649,LOC108270756)


Basic Information

Item Value
gene id LOC103027567
gene name LOC108438649,LOC108270756
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15143469 ~ 15170638 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603330.2
GTCCGGAGTTTTTCTCACAGCTCAGACCCTCCCTGAGGAAAGGCAGTGATATAATGGGGCGAGCCTGAGTCACCGCTGCCTTTCTCATAGGACGTTTTAATTCAGAGCAACCTTCAGGTAGTTTATAAGAGCGCGGTGAGCTCATATTGATTCGTGCTGTGGGGCAGATCAGGGGGATGAACGGATGGGATGTGAAGGATGTCAGTGTTTGTAAATCAGCTTCTTAACTGATTAAAGGGAGAAGGGCAGCTATGCGATCCATCAGGCACCACACCACTGTCCTGCAGACCACACCAGACTGCCTTGATTAGAGGGTGATAATCAAAGCTGAGCGTGACGTAATGCGGACAAAAGCATGCTGAGTGACTTGGCAAGCTTGGCGAGCCCGGCTGAACTTCGCTGAGAGGATGAGGCAGGCAGTAACTGCCACTCTCTCTGTGTGGGGGGAGAGACGCTTCGGTTACTCCACGCTGAAAGACTCCAGGGAGGCACTGCTGGATGAGGGCTGGCTCATGCCTGGCCTTAAGGAGGACTCTGTGATAGAGGAGAAGGAGCTGGCCGACAGCGAGCAGGAGCAGCTGGAGGTTGTGCTGGGAAGTGCGCCGTCCACCCCAGAAGATGCTCAGACCCAGGGTGACCCAGGCCAGCCTGAGACAGACACACTGTCCTCTGCCCACAAGTGTGAGTCACCGTCAGGCCGCAGAGCCAGTGTGAACGTGACTGGGTCTGAGATTGGAGCGTCCCATGTGAGGAGGGGGTCTCTTGGTGCCCTCCCTGTGCAGCGCTGCAGCTCCCTGGGCTCCACAGCCCCTCAGTGGGTCCCTGATTCGCAGGCTCCTGCGTGTATGAAATGTGGCTCCAAATTCTCCTTCACAAGGAGGCGGCACCACTGCAGAGCCTGCGGGAAGGTGTTCTGTGTGGTGTGCTGTGACTTGAGATTCAGATTAACTCACCTGGGTGGAAAAGAGGGGCGTGTCTGTGTCACCTGTCACTCAACTCTCATTAACAGAACTCTTCGGAAGGAGCAAAAGAAAGTTTGGTTTGCTGACAGTGTCGAATCAAAAAATGAGTCGTCCAGTGCCAATAATACTCCAACTCACATGGATGCAATCCagacacacactcctgcagcaGCTCAAGTGGTGTCAACGGATCTGCCTGAGTTGATGAACTCACCTTGCTTGGAAAGGGAGGAAGTGGTCAACAGCCCCAAAGGAAGCTCAGCTAAACCCTTACCACACAAGGGACTTCCTCCCATCCTCACATCTACAGGGGTTAAAGGAGATTACACGGTGGAGGAGAAGCGGACAGAGTCCTCACtgctggaggagctggagcaaGGTCAGACCGAGCCGCTGGTGTTTGTCCTCAACGCCAACCTTCTGGCCATGGTGAAGATCGTCAGCTATGTGAACAGGAGATGCTGGTGTGTGATGTCTAAAGGGATGCATGCTGTGGGTCAGCCAGAAGTGGTCGTGCTGTTGCAGTGTCTGCCCGAAGAGAAGAGGTTCCCCACAGACATTTTCAGCCACTTCATTCAGATCTACTGGGATGCACAGACTGCAGGAAAGCTCTTGAACCACCTGAGTCACTCGGTGGCGGCGCGAGGGTTCCTGGGCAGTAAAGAACATGCTGGCTTTCTCTACATGCGTCCAACGTTCCAGTCCCTGGATGGCTTGCCTTTGCCTCCACAGCCCTTTTTGTTTGGCCTGCTGATCCTGCGGGCTGAGATTCCCTGGGCTAAAGCCTTCCCGTTGCGACTGATGCTGCGTTTGGGTGCAGAATATCGATTTTATCCCTGTCCTCTGTTCAGTGTGCGCTTCAGAGAGCCGCTCTTTGGCCAGATTAATAACAGCATCATGAGACTCCTAGTGGACTTTCGCTTCTACCGTTACACGTTGCCGGTGGTGACAGGCCTCATGGTTGATTTGGAGGCACGGAGCACATGCATCACGATTCCTAAATCACGGCATGCGGAGCTGCTGAAGGCGCTGAATAAGTCGAATGAGAGAGTGCTGGCTATGGGAGCTTGCTTTAACGAGCGCGCCGACTCCCACCTCATCTGTGTGCAGACTGCAGATGGACAGTACCAAACACAGGCAATCAGTATCCACAGTCAGCCACGCAgagttaCAGGCTCCTGCTTTTTTGTGTTCAGTGGAGCCTTGAAAGCCTCATCAGGATACCTGGCCAAATCCAGCATTGTTGAAGATGGTTTGATGGTTCAAGTTACGATGGAAACCATGCTGGAGCTGCGGCGAGCTCTCCGTGACATGCGGGACTTCACCCTCACCTGTGGGAAACTCCagcagtcagacagacaggagTATGTGCACATTCAGTGGCAAGACGAGGAGCCTCGCTTCAATAAGGGTATAATCAGCCCCATTGATGGCAAATCTATGGAATCCATCAGTTGTGTCAAGACACACCAACGATTAGAATATCGAGCCAACGGAAAGGTCATACGCTGGACGGAGGTGTTCTTTCTTCAGAGGGAGGAGCAATCAAACGGGCCAAATGCTAACGCCAATCATAACCGCCTGACAGAACGGCTGGCACGGGCCTTCTGTTTGGCGCTGTGCCAGTCTCTGAGCCTGCTGAAAGAGGATGGCATGACCAAACTAGCACTGCGGGTCACACTAGACGGGCAGAAGATGGAGTTCCTGGCAGGCAGTAATGGCCAGGCTCTGCCGCTGCACTACCAGGACAGTCTCAACCAGTCATTACGGGCCGTCGTACAGAGCGTCTCTCAGCGCCACGGACACGCTGCCCTGCAGCTGGAGCTCATTTTCTACATCCTGGAGGACATATCCTAGAGAACACCTCTCGGACCCCCCACCATGGTGCCATCTGCCTGACCATCCAGAGCTGGATGAAACGGAAGACAGACACACTGTGCCAAATCTCATAATTCAAGCCAATCCACTCTAAACCTTTCGTCTCGCTTTATtgattactgaaaaaaaaatcggtgGCAAATTTGCATTACTAAATTACCACTCTCCATATAACGCAGTGTTTCtcggtcttggtcttggtcccCCTCCCGCCCAACACTTGTTTCAGAGTATTCCCTGCTTTAACGCACTCACTGACTCTCTGAAGGGgcttgttaatgagctgatgagttgaatcaggtgtgttgaaGTGTTAAAGCACtaaggctgtgttcagactgcaggtaaTGCCAATTTGTTTCTTGAAACAGAACAGATCTGTTGAGATGACTGTTCAATCcgtaaccctgcgttcacactggaaagtgACAAGTCTCTTGTGGGTGGGTTGGAGGCTGTTTGTGCTGTCGGGAGTAGGTGGGTATCGGTATGGCCGGTTAGCATGCTATTAAGCTACCCATCAAGCTCTACTCCACTGTCTTCCAAGCTTTTATGTTTCTCCAAACTGCTCCTGAGTTTGTGCAAAACTGATCAAGTAAAACAGAAagagcaaaaacaacaaaaacagcaactatatCCTTCTCTGTCTGTTTAGAACCTGGAAATAGCATAGAGGACCTTGCACCCCATGTCTGTGATTGGTGCAAAGGATTTGTTTGGCTTATTAGTGTAGAATGTCACCCCACCGTGTCATAATTCAtgtgcataaagttgagaaaatttGAA
>XM_022669669.1
GAGGGGGTCTCTTGGTGCCCTCCCTGTGCAGCGCTGCAGCTCCCTGGGCTCCACAGCCCCTCAGTGGGTCCCTGATTCGCAGGCTCCTGCGTGTATGAAATGTGGCTCCAAATTCTCCTTCACAAGGAGGCGGCACCACTGCAGAGCCTGCGGGAAGGAACTCTTCGGAAGGAGCAAAAGAAAGTTTGGTTTGCTGACAGTGTCGAATCAAAAAATGAGTCGTCCAGTGCCAATAATACTCCAACTCACATGGATGCAATCCagacacacactcctgcagcaGCTCAAGTGGTGTCAACGGATCTGCCTGAGTTGATGAACTCACCTTGCTTGGAAAGGGAGGAAGTGGTCAACAGCCCCAAAGGAAGCTCAGCTAAACCCTTACCACACAAGGGACTTCCTCCCATCCTCACATCTACAGGGGTTAAAGGAGATTACACGGTGGAGGAGAAGCGGACAGAGTCCTCACtgctggaggagctggagcaaGGTCAGACCGAGCCGCTGGTGTTTGTCCTCAACGCCAACCTTCTGGCCATGGTGAAGATCGTCAGCTATGTGAACAGGAGATGCTGGTGTGTGATGTCTAAAGGGATGCATGCTGTGGGTCAGCCAGAAGTGGTCGTGCTGTTGCAGTGTCTGCCCGAAGAGAAGAGGTTCCCCACAGACATTTTCAGCCACTTCATTCAGATCTACTGGGATGCACAGACTGCAGGAAAGCTCTTGAACCACCTGAGTCACTCGGTGGCGGCGCGAGGGTTCCTGGGCAGTAAAGAACATGCTGGCTTTCTCTACATGCGTCCAACGTTCCAGTCCCTGGATGGCTTGCCTTTGCCTCCACAGCCCTTTTTGTTTGGCCTGCTGATCCTGCGGGCTGAGATTCCCTGGGCTAAAGCCTTCCCGTTGCGACTGATGCTGCGTTTGGGTGCAGAATATCGATTTTATCCCTGTCCTCTGTTCAGTGTGCGCTTCAGAGAGCCGCTCTTTGGCCAGATTAATAACAGCATCATGAGACTCCTAGTGGACTTTCGCTTCTACCGTTACACGTTGCCGGTGGTGACAGGCCTCATGGTTGATTTGGAGGCACGGAGCACATGCATCACGATTCCTAAATCACGGCATGCGGAGCTGCTGAAGGCGCTGAATAAGTCGAATGAGAGAGTGCTGGCTATGGGAGCTTGCTTTAACGAGCGCGCCGACTCCCACCTCATCTGTGTGCAGACTGCAGATGGACAGTACCAAACACAGGCAATCAGTATCCACAGTCAGCCACGCAgagttaCAGGCTCCTGCTTTTTTGTGTTCAGTGGAGCCTTGAAAGCCTCATCAGGATACCTGGCCAAATCCAGCATTGTTGAAGATGGTTTGATGGTTCAAGTTACGATGGAAACCATGCTGGAGCTGCGGCGAGCTCTCCGTGACATGCGGGACTTCACCCTCACCTGTGGGAAACTCCagcagtcagacagacaggagTATGTGCACATTCAGTGGCAAGACGAGGAGCCTCGCTTCAATAAGGGTATAATCAGCCCCATTGATGGCAAATCTATGGAATCCATCAGTTGTGTCAAGACACACCAACGATTAGAATATCGAGCCAACGGAAAGGTCATACGCTGGACGGAGGTGTTCTTTCTTCAGAGGGAGGAGCAATCAAACGGGCCAAATGCTAACGCCAATCATAACCGCCTGACAGAACGGCTGGCACGGGCCTTCTGTTTGGCGCTGTGCCAGTCTCTGAGCCTGCTGAAAGAGGATGGCATGACCAAACTAGCACTGCGGGTCACACTAGACGGGCAGAAGATGGAGTTCCTGGCAGGCAGTAATGGCCAGGCTCTGCCGCTGCACTACCAGGACAGTCTCAACCAGTCATTACGGGCCGTCGTACAGAGCGTCTCTCAGCGCCACGGACACGCTGCCCTGCAGCTGGAGCTCATTTTCTACATCCTGGAGGACATATCCTAGAGAACACCTCTCGGACCCCCCACCATGGTGCCATCTGCCTGACCATCCAGAGCTGGATGAAACGGAAGACAGACACACTGTGCCAAATCTCATAATTCAAGCCAATCCACTCTAAACCTTTCGTCTCGCTTTATtgattactgaaaaaaaaatcggtgGCAAATTTGCATTACTAAATTACCACTCTCCATATAACGCAGTGTTTCtcggtcttggtcttggtcccCCTCCCGCCCAACACTTGTTTCAGAGTATTCCCTGCTTTAACGCACTCACTGACTCTCTGAAGGGgcttgttaatgagctgatgagttgaatcaggtgtgttgaaGTGTTAAAGCACtaaggctgtgttcagactgcaggtaaTGCCAATTTGTTTCTTGAAACAGAACAGATCTGTTGAGATGACTGTTCAATCcgtaaccctgcgttcacactggaaagtgACAAGTCTCTTGTGGGTGGGTTGGAGGCTGTTTGTGCTGTCGGGAGTAGGTGGGTATCGGTATGGCCGGTTAGCATGCTATTAAGCTACCCATCAAGCTCTACTCCACTGTCTTCCAAGCTTTTATGTTTCTCCAAACTGCTCCTGAGTTTGTGCAAAACTGATCAAGTAAAACAGAAagagcaaaaacaacaaaaacagcaactatatCCTTCTCTGTCTGTTTAGAACCTGGAAATAGCATAGAGGACCTTGCACCCCATGTCTGTGATTGGTGCAAAGGATTTGTTTGGCTTATTAGTGTAGAATGTCACCCCACCGTGTCATAATTCAtgtgcataaagttgagaaaatttGAA

Function

NR:

description
PREDICTED: zinc finger FYVE domain-containing protein 9-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603330.2 True 3626 mRNA 0.52 16 15143469 15170638
XM_022669669.1 False 2775 mRNA 0.51 14 15146691 15170638

Neighbor

gene id symbol gene type direction distance location
LOC103026176 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 coding upstream 2073 15138264 ~ 15141396 (+)
ptgfr ptgfr coding upstream 7060 15130977 ~ 15136409 (+)
zgpat zgpat coding upstream 46256 15091371 ~ 15097213 (+)
rtel1 rtel1,LOC107579445 coding upstream 53538 15062627 ~ 15089931 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding upstream 91694 15045274 ~ 15051775 (+)
LOC103027889 mob3c,LOC103027889,LOC108438648,LOC108270829,LOC106574029,LOC106613547 coding downstream 42621 15213259 ~ 15225170 (+)
mknk1 mknk1 coding downstream 56512 15227150 ~ 15234385 (+)
atp5b atp5b,LOC107723059,LOC100693141,LOC102199207 coding downstream 82277 15252915 ~ 15257121 (+)
LOC103028308 abcb11,abcb11b,LOC108438644,LOC107692229,LOC107602798,LOC108270741,LOC105911976,LOC103354593 coding downstream 104788 15275426 ~ 15296603 (+)
LOC103028625 NA coding downstream 186174 15356812 ~ 15376156 (+)
G42648 txlng non-coding upstream 82022 15058618 ~ 15061447 (+)
G42647 txlng,LOC107665847 non-coding upstream 85794 15057215 ~ 15057675 (+)
G42637 txlng non-coding upstream 88589 15017800 ~ 15054880 (+)
G42636 npepps,LOC107098842,LOC102793525 non-coding upstream 123934 15014943 ~ 15019535 (+)
G42633 NA non-coding upstream 132495 15010480 ~ 15010974 (+)
G42807 NA non-coding downstream 207363 15378001 ~ 15378608 (+)
G42810 NA non-coding downstream 244039 15414677 ~ 15415189 (+)
G42813 NA non-coding downstream 250074 15420712 ~ 15421122 (+)
G42814 NA non-coding downstream 250514 15421152 ~ 15421453 (+)
G43035 NA non-coding downstream 864560 16035198 ~ 16037119 (+)
G42605 NA other upstream 244221 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 1008923 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1286108 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1521427 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1621212 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 807848 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1270293 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1645963 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1777742 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1841829 17012467 ~ 17017856 (+)

Expression


Co-expression Network