LOC103041829


Basic Information

Item Value
gene id LOC103041829
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14359209 ~ 14412035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603341.2
aatacagGCTGGtagctgcagcattagcattagcccctaaACGCAGCGCTACCAGGatgtaaatgccacccgacagtaCTAGACTGAAGAAAactgagtgtttcgATGAGAATGGGTCCTCCTGTCAGGGCTCCATCCTGGACGGCCAGTTTGAAGGCTCTATCAAAACCCCCAATGGCACCTTTTATGTGGAATCAGCAGATAAATACACCAACAAACACTCAGATCATCACTCCGTTATCTACCACGAAGACGATGTTGacGACTCTGTCCTGGGAGGTGGTGGCCATGCCGGGTTCTGCGGTGCTGCCCGACTGCAAAGCCTCATTCAAAGCCTCAGACCGGAAGGACCGGTGTCCAGGTCAAAGAGGACAGTGGACCAGACCAAAACCACCTGCCTCCTACATCTGCATGCAGACCACTTTTTTTATCAGAGGTTTGGCAGCGTTGCGGCTGTTGTTGCCCAGGTTGCTTCTTATTTGAAAGCAGTAAATGACATTTTTGACAAGGCAGACTTTGATGGGATTGATCTGGTCAATTTCAAGGTGAAATCGATGAGTGTTGCCTCAGAAGAAGATGAGCGTGACCCTCTTCAGGAGACCTACATTGGCCCTGAGAAGCTGCTGAGTCTTTATTCAGAGACAAACTGGGGCAACTACTGCCTGTCCTACTTGCTGACCAACCGAGACTTTAGTGGAGTTCTGGGTCTGGCCTGGGAGGGAAAGGCAGATGACTGGGGAGGGATCTGCTCTAAGAATCTGCAGCTACAAGATGGACGTACGTCCAGCCTGAACACCGGCTTGATCACCCTGAAGAACTTTGGCTACTACCTCCCGCTCAAGTTCATCCAGCTTACCTTGGCTCATGAATTCGCCCACAGTCTAGGAGCTCCTcATGATGAGGGCTTGGACTGTGGGGGGCTGGAAGTCACCAAAGGGAAAGGAAGATTCCTGATGTTCCCACAAGCCACAGACAAGATCCTGGAGAACAGTGATAGGTTCTCGCCCTGCAGCCTTCGCCGTATCAGCCGCCTGCTGAAGATCAAGAAGGACAAATGCTTTGTGGTCAGCGATCAGCCCATCTGTggaaaccagattttggaggtAGGAGAGGAATGTGATGTGGGTCATAATGAAAGCGATCCATGCTGCTACAGTTCGAGGGGGCCAGTAGGACATCAGTGTCGCCTGAAGCCCAATAAGCAATGCagTCCTAGTCAGGGTCTGTGCTGTAGCTCCAGCTGTGAGTTTAGGAACCCAGGACTCACCTGTGAGGAAGACTCCGAGTGTCGGACGAAGAGCGAGTGCACAGGGTTCTCAGCTTCCTGCCCCAAGCCTGCTGCCAAACCAAACATGACACTGTGCAGCCTGGGTACCCGTGTTTGTCTGAATGGGGAATGCAGCCGGTCGCTGTGTTTGATATATGACTTGGAGCAGTGTGACTGTCCAGGAGAGAACAAGAAGGAAAAGTGCCACATGTGCTGCCAGCAGAAGGGTAATCCGAACACCTGTGCGAGCACCACTTCCTCCGTACTCTCGATGCACTTTAAAGGAAAGCAGGTGGCGCTGGTGCCCGGATCACCCTGCTCTAAAAACCAGGGCTACTGCGACCACTTCCAGACCTGCCGATTGGTGGATGCAGATGGGCCAGTTGCCAGGCTGAAAAATTCTTTCCTGCATCTGGATGAATTTGAAGACTTGGCGGACTGGATGaagGCACAGTGGTGGGTGATATTGCTAGCCATTCTCGGCATCTCAGCAGTGATGGCTggcactgtctgtctgtttggaCATACCCTGGAGAGTGATGACACCTAATCATAAGCAGGTTAGCTTTGAACGGGACATTACTACTGTTTGAGTATTTCAGATTCCCGGCATAGTTGGACTGACAGCCCAGAATAAAGTGTGGGTCTTGGTGGAGGCATCTCGACGGGTTCCCCTTTTTAAACACATCTGTTTAAACATCATTTAGGTTTTCTTGGACTCCTTCGCCTCTGAGATTCACCCCATTTGTCCTCAGTAAGCTGTTTGAACTTCACGGCTAATTTGAGCCAACATTTCAATGCTCCTTTAGTAACTCATTCAGTACTGCCATGAGTGTAAGTGACACAATTATAACCCTTTTATTTAATATCCAAACCAACCAGATAAACTATACACGTATTCTGAGTTTTATACACAGTGTCATATTGATGATGGTAGCTAAAGTAGTGACTTTAAAAAGAATCTGACAAACCTGAAAAAACTGATTTGGAAACCAGTGAACCAGCACAGAGTCATGGACTTTCAAGGGTCAGTAATGTTCAATGAGGGCTTACCTCACACCTTACAATGTTAGCCTTGGTGTCAGATAGACTACCACTGTAAACTTTCAAAAGGTCTTGAGAAGTCCATTCCTTAAAGGATCAGGGCTGTTTTAGTGGCACAAAGGAGACCCACACAATATTATGTGTAGAtattggttttaatgttatggctgtatTCCATGGATTATTTTTTGTACAATCACAAGACACATTTCAGTATATACTCTGCAGTCTATACTCTGCGTTTGATTGTCCAAAGAACTTTTACAGGgggaaaaatgttgtaaaatttaTTCTGACCATAAAAAGGGGAAAAAGGAAATTGCATAATTATCAAATCACAAAAACACCAGTGTAATAATCCCATGAATTGCCCGAAAGTAACCTCCTGAAATTGCATCAGATGCAGATGTAgaaattgtgtgtttgtggaatTTGCTTTCTAAACCCATCTACCCTCAGTGTACTGCCCTTTTTTTTAGGGTTATCATGACAAACAAGACTCTAGTGACATTTAGTTATCATTTAATAGGTCAACCTGATAAGTAAATAACCTGGAATTACAGGATTGGGCTAGTTTGAGCTGCTGTATCTGCGTATTTCACTCTTTAAAGGGCTATGCCCCTTTTGCACTTACATAAATATTAAGCAATGGTCAGTTTCACTCTAAGATataaaagaaaacacttaaGCTTAA
>XM_022669651.1
CATTCCTTTCTACAGCATTCCCAGGTAACACAGACAACATGGCAGCCAAAGCTTCGATTGCTCTGAAGTTGTGCCTGATGATCACTTATCTGATTTTAGAGGAGCTCAGTGCAGACGATCTGAGGAACATGGGGAAGTTCATTAAATACTACGAGACTCTGTCATATGACAGAGATTCCTTACTACACCAGCATCAGAGGGTAAAACGGCATCTTCACCCGCAAAAGCAGGTGCTGAAGTTGGACTTTGAAGCTTTCCACAGGGCCTTCCATTTACGACTCAAGCAAGACTTTGATGGGTTTACAGATGATTTCAAGGTCCGATCTGGAAATGAGTCACGGACCGGAGATCTTTCTCACATTTACTCAGGAGTTCTGGAAGATGAGAATGGGTCCTCCTGTCAGGGCTCCATCCTGGACGGCCAGTTTGAAGGCTCTATCAAAACCCCCAATGGCACCTTTTATGTGGAATCAGCAGATAAATACACCAACAAACACTCAGATCATCACTCCGTTATCTACCACGAAGACGATGTTGacGACTCTGTCCTGGGAGGTGGTGGCCATGCCGGGTTCTGCGGTGCTGCCCGACTGCAAAGCCTCATTCAAAGCCTCAGACCGGAAGGACCGGTGTCCAGGTCAAAGAGGACAGTGGACCAGACCAAAACCACCTGCCTCCTACATCTGCATGCAGACCACTTTTTTTATCAGAGGTTTGGCAGCGTTGCGGCTGTTGTTGCCCAGGTTGCTTCTTATTTGAAAGCAGTAAATGACATTTTTGACAAGGCAGACTTTGATGGGATTGATCTGGTCAATTTCAAGGTTGCCTCAGAAGAAGATGAGCGTGACCCTCTTCAGGAGACCTACATTGGCCCTGAGAAGCTGCTGAGTCTTTATTCAGAGACAAACTGGGGCAACTACTGCCTGTCCTACTTGCTGACCAACCGAGACTTTAGTGGAGTTCTGGGTCTGGCCTGGGAGGGAAAGGCAGATGACTGGGGAGGGATCTGCTCTAAGAATCTGCAGCTACAAGATGGACGTACGTCCAGCCTGAACACCGGCTTGATCACCCTGAAGAACTTTGGCTACTACCTCCCGCTCAAGTTCATCCAGCTTACCTTGGCTCATGAATTCGCCCACAGTCTAGGAGCTCCTcATGATGAGGGCTTGGACTGTGGGGGGCTGGAAGTCACCAAAGGGAAAGGAAGATTCCTGATGTTCCCACAAGCCACAGACAAGATCCTGGAGAACAGTGATAGGTTCTCGCCCTGCAGCCTTCGCCGTATCAGCCGCCTGCTGAAGATCAAGAAGGACAAATGCTTTGTGGTCAGCGATCAGCCCATCTGTggaaaccagattttggaggtAGGAGAGGAATGTGATGTGGGTCATAATGAAAGCGATCCATGCTGCTACAGTTCGAGGGGGCCAGTAGGACATCAGTGTCGCCTGAAGCCCAATAAGCAATGCagTCCTAGTCAGGGTCTGTGCTGTAGCTCCAGCTGTGAGTTTAGGAACCCAGGACTCACCTGTGAGGAAGACTCCGAGTGTCGGACGAAGAGCGAGTGCACAGGGTTCTCAGCTTCCTGCCCCAAGCCTGCTGCCAAACCAAACATGACACTGTGCAGCCTGGGTACCCGTGTTTGTCTGAATGGGGAATGCAGCCGGTCGCTGTGTTTGATATATGACTTGGAGCAGTGTGACTGTCCAGGAGAGAACAAGAAGGAAAAGTGCCACATGTGCTGCCAGCAGAAGGGTAATCCGAACACCTGTGCGAGCACCACTTCCTCCGTACTCTCGATGCACTTTAAAGGAAAGCAGGTGGCGCTGGTGCCCGGATCACCCTGCTCTAAAAACCAGGGCTACTGCGACCACTTCCAGACCTGCCGATTGGTGGATGCAGATGGGCCAGTTGCCAGGCTGAAAAATTCTTTCCTGCATCTGGATGAATTTGAAGACTTGGCGGACTGGATGaagGCACAGTGGTGGGTGATATTGCTAGCCATTCTCGGCATCTCAGCAGTGATGGCTggcactgtctgtctgtttggaCATACCCTGGAGAGTGATGACACCTAATCATAAGCAGGTTAGCTTTGAACGGGACATTACTACTGTTTGAGTATTTCAGATTCCCGGCATAGTTGGACTGACAGCCCAGAATAAAGTGTGGGTCTTGGTGGAGGCATCTCGACGGGTTCCCCTTTTTAAACACATCTGTTTAAACATCATTTAGGTTTTCTTGGACTCCTTCGCCTCTGAGATTCACCCCATTTGTCCTCAGTAAGCTGTTTGAACTTCACGGCTAATTTGAGCCAACATTTCAATGCTCCTTTAGTAACTCATTCAGTACTGCCATGAGTGTAAGTGACACAATTATAACCCTTTTATTTAATATCCAAACCAACCAGATAAACTATACACGTATTCTGAGTTTTATACACAGTGTCATATTGATGATGGTAGCTAAAGTAGTGACTTTAAAAAGAATCTGACAAACCTGAAAAAACTGATTTGGAAACCAGTGAACCAGCACAGAGTCATGGACTTTCAAGGGTCAGTAATGTTCAATGAGGGCTTACCTCACACCTTACAATGTTAGCCTTGGTGTCAGATAGACTACCACTGTAAACTTTCAAAAGGTCTTGAGAAGTCCATTCCTTAAAGGATCAGGGCTGTTTTAGTGGCACAAAGGAGACCCACACAATATTATGTGTAGAtattggttttaatgttatggctgtatTCCATGGATTATTTTTTGTACAATCACAAGACACATTTCAGTATATACTCTGCAGTCTATACTCTGCGTTTGATTGTCCAAAGAACTTTTACAGGgggaaaaatgttgtaaaatttaTTCTGACCATAAAAAGGGGAAAAAGGAAATTGCATAATTATCAAATCACAAAAACACCAGTGTAATAATCCCATGAATTGCCCGAAAGTAACCTCCTGAAATTGCATCAGATGCAGATGTAgaaattgtgtgtttgtggaatTTGCTTTCTAAACCCATCTACCCTCAGTGTACTGCCCTTTTTTTTAGGGTTATCATGACAAACAAGACTCTAGTGACATTTAGTTATCATTTAATAGGTCAACCTGATAAGTAAATAACCTGGAATTACAGGATTGGGCTAGTTTGAGCTGCTGTATCTGCGTATTTCACTCTTTAAAGGGCTATGCCCCTTTTGCACTTACATAAATATTAAGCAATGGTCAGTTTCACTCTAAGATataaaagaaaacacttaaGCTTAA

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0006508 proteolysis biological_process
GO:0006509 membrane protein ectodomain proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603341.2 False 3005 mRNA 0.46 13 14363154 14412035
XM_022669651.1 True 3266 mRNA 0.46 15 14359209 14412035

Neighbor

gene id symbol gene type direction distance location
LOC103042131 LOC108424984 coding upstream 14029 14334095 ~ 14345180 (+)
LOC103040508 LOC108414270 coding upstream 26170 14312498 ~ 14333039 (+)
mrpl54 mrpl54,LOC102788358 coding upstream 49578 14306723 ~ 14309631 (+)
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding upstream 360784 13989840 ~ 13998425 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844 coding upstream 374728 13981191 ~ 13984481 (+)
bsg NA coding downstream 50615 14462650 ~ 14480454 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding downstream 71906 14483941 ~ 14534170 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding downstream 210143 14622178 ~ 14660025 (+)
LOC103026778 NA coding downstream 299339 14711374 ~ 14725957 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding downstream 422189 14834224 ~ 14868739 (+)
G42496 fam32a,LOC107757479 non-coding upstream 52268 14303418 ~ 14306941 (+)
G42469 NA non-coding upstream 198498 14160405 ~ 14160711 (+)
G42446 NA non-coding upstream 212852 14086909 ~ 14146357 (+)
G42442 NA non-coding upstream 285873 14056598 ~ 14073336 (+)
G42386 NA non-coding upstream 333813 14021643 ~ 14025396 (+)
G42521 NA non-coding downstream 254 14412289 ~ 14413746 (+)
LOC111192557 NA non-coding downstream 126286 14538321 ~ 14560369 (+)
G42564 NA non-coding downstream 215822 14627857 ~ 14669283 (+)
G42571 LOC103031381 non-coding downstream 273264 14685299 ~ 14688753 (+)
G42583 NA non-coding downstream 316425 14728460 ~ 14733285 (+)
eps15l1 eps15l1 other upstream 224663 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 501848 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 737167 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 836952 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 908732 13448592 ~ 13450477 (+)
G42605 NA other downstream 483027 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1566451 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2028896 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2404566 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2536345 16948380 ~ 16950360 (+)

Expression


Co-expression Network