G47654


Basic Information

Item Value
gene id G47654
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11017763 ~ 11019209 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU54203
GGGCCTGCACAGGGTCTTCAGCAGCGAGAGCGATGCTGCTCATGGTGATGACTGTGAGGATACACATCTCAAAATACCGCAGGTTCACCACATAATGACACAGCCGTCTCACTGGGTTAGTTGGGCCAAACACAAACATGGAGCTGTATGGCAGAATGTGTTTGGGCGCATTCTGATTTAGCTCATCAAGATCCTTCTTTTCCTCGTTCAGCAGTAGACTGTCACCATCAATGTTGTTCATGGGAATGATTATGGTCTCTCCTGGCGGGGCAGTTATGGTGACGGGGATGTTGACTCCGGTTGGGCCTGCTCTGGTGCTGTTTTTTAGATTATCCGTGACTTCTGGCTTCTCATCAGTAGGAGACTGGAGAGGGCTGGTGGCTAGGCTGTCTGTTTCTGTCGGTCTGCCCCTGTAATAATGGAAAGCTATACATCTGAACAAAATAATGTACAACATATATATACACACAATATAACTCAAAGTGCTCCCTAATGCTTTGCAAAGTACATGCACATCAAAGCAACAATGAAATTGTAGCAACAAATGTCATGTCTGATCATACACTCAAAATGTCTCACATAATATGATGAATGACACTGCATTATGTAACAAAAAATCAAATGTCATTTATTTAAAAAAAAAAAACAACAACAACAGATATTTCAAGCAAAACATTTAAAAGATGTTTGAAAGATTTTAAATTCTAAAACAATAGATGTACTGTTATAAATGAAGAAAAAAGTATTTGGACACTTTATCAAACATTAGTGGCACATATTCAAAATTCATGTGATGAACTATACGTTTGGTTACTCTGCTATACTTGTGTAAACATGAGGAGAACTGACTTCATGCACTGAAAATCACCTTGAAACAAGTTGGTTAAAAGATATTGCAAAAATTGCTCATAAATGTGAAGTTAGTTTTGACAAAAGCCCTATTTGTTTGCAGATTACACTTTGTTTATTATTTTTGATATCTAAATGTACAGATTTTTTTTTTTTTTTTTTTTAAAGTATGGCTTAAAGGGATAGTTCACTCAAAAATGAAAATTCTGTCATCATTCACTCACCCTGTATGACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54203 True 1085 lncRNA 0.37 3 11017763 11019209

Neighbor

gene id symbol gene type direction distance location
CI01000006_10676705_10699710 NA coding downstream 317881 10676367 ~ 10699882 (-)
CI01000006_10499329_10508831 NA coding downstream 508108 10499240 ~ 10509655 (-)
CI01000006_10453630_10483241 NA coding downstream 533757 10453613 ~ 10484006 (-)
CI01000006_10402704_10447782 NA coding downstream 568662 10402695 ~ 10449101 (-)
CI01000006_10372387_10387314 NA coding downstream 630161 10372129 ~ 10387602 (-)
CI01000006_11320839_11338355 STXBP1, STXBP1A coding upstream 301253 11320462 ~ 11338355 (-)
CI01000006_11388077_11391485 NA coding upstream 368285 11387494 ~ 11391485 (-)
CI01000006_11459706_11462546 NA coding upstream 440079 11459288 ~ 11462605 (-)
CI01000006_11530728_11535297 NA coding upstream 511157 11530366 ~ 11535900 (-)
CI01000006_11596063_11609407 NA coding upstream 576430 11595639 ~ 11609407 (-)
G47638 NA non-coding downstream 28960 10974694 ~ 10988803 (-)
G47622 NA non-coding downstream 92153 10917556 ~ 10925610 (-)
G47618 NA non-coding downstream 103665 10913811 ~ 10914098 (-)
G47584 NA non-coding downstream 104524 10862069 ~ 10913239 (-)
G47601 NA non-coding downstream 112476 10904852 ~ 10905287 (-)
G47668 NA non-coding upstream 35694 11054903 ~ 11055581 (-)
G47673 NA non-coding upstream 44464 11063673 ~ 11069048 (-)
G47681 NA non-coding upstream 92405 11111614 ~ 11115511 (-)
G47758 NA non-coding upstream 268426 11287635 ~ 11292481 (-)
G47806 NA non-coding upstream 459897 11479106 ~ 11482501 (-)
CI01000006_07500281_07507754 NA other downstream 3506807 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 4040891 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 6455695 4559509 ~ 4562068 (-)
G43549 NA other downstream 6662335 4352510 ~ 4355428 (-)
G47658 NA other upstream 11702 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 631154 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 1315200 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 1331550 12569205 ~ 12582487 (-)

Expression


Co-expression Network