rfxank (rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616)


Basic Information

Item Value
gene id rfxank
gene name rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 11762622 ~ 11767697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606696.2
ataacagagGAAGATAGGAAGTGGACAGGCTCACCTTAAACCAGCTCTGATACAACGCTTTTAGCTCGAGAAACACCAAACTAGAAACGAGCTCACAGGGATTTCTTTTTACATGTGTTGTATATGTAGTCATTTAACCAAAGAATCACACAGTAGTGAGGAGTGATGATCAGCAGAGATGGAAAGTATGAGTGATGACGGTGCGATAAACCACAACACCACCCTGACTAATAAACACAGGGGGAACGAGGTCACAGTGCGGCCAGCCACTCTGGACCATCTGTCCATTCATCAGCTTGCTGCACATGGAGAAATGGCTCAAATGAAGATGCACCTTGACTCTGATATGTCTCTACTCAACAGTCAGGATGAACGAGGCTTCACTCCGCTGATGTGGGCGGCTGCATTTGGAGAGATCGAAATGGTCCAGTTTCTCCTGGAAAAGGGAGCTGATCCCAGAACATTTGCGCGAGAGCGAGAAAGTGCCTTGTCTTTAGCCAGCGCCTGTGGGTTCGCAGACATTGTCAACATTCTCTTAGAACACAAAGTTGACATAGACTCCTACGACTGGaacGGAGGTACCCCTCTTCTTTATGCAGTCCGTGGCAATCATATGAGGTGTGTGGAGTATCTCTTAGGTCACGGTGCTGATATTACATTCGAAGCTGACTCTGGATACAGTCCGGTGGCCCTGGCTGTTGCGCTTGGCtacaaaaaaaTGCAAAAGCTACTTGAGGACCACATTCTGAAACTGTTACGAAGCTGAACCAGATGACCAAACCACAAAGaacaattttttctttttttgtctgttcGTTCCTCTCCTTGTAAACCTTTTTAtacctttttaataaaaaatgacaaacatgTAAA
>XM_022669608.1
GTGCAgtcatttaataatataacagagGAAGATAGGAAGTGGACAGGCTCACCTTAAACCAGCTCTGATACAACGCTTTTAGCTCGAGAAACACCAAACTAGAAACGAGCTCACAGGGATTTCTTTTTACATGTGTTGTATATGTAGTCATTTAACCAAAGAATCACACAGTAGTGAGGTATGTGCCTATTTAAACGATAAAACTCAGCGCACTGTGCTTCCCTGTAGTCTGTTAGCCAGTTAGCCTAGTTAGCTTAGTTAGTTTCACTTTTGTTAGCCAGCAAACCCAGTCAGGAAAtggaaaaacagacaaaaccCGCATAAAAGAGTCTCCTGATACTCCCACAGACTCAGAGTAGCGACGGAGTGATGATCAGCAGAGATGGAAAGTATGAGTGATGACGGTGCGATAAACCACAACACCACCCTGACTAATAAACACAGGGGGAACGAGGTCACAGTGCGGCCAGCCACTCTGGACCATCTGTCCATTCATCAGCTTGCTGCACATGGAGAAATGGCTCAAATGAAGATGCACCTTGACTCTGATATGTCTCTACTCAACAGTCAGGATGAACGAGGCTTCACTCCGCTGATGTGGGCGGCTGCATTTGGAGAGATCGAAATGGTCCAGTTTCTCCTGGAAAAGGGAGCTGATCCCAGAACATTTGCGCGAGAGCGAGAAAGTGCCTTGTCTTTAGCCAGCGCCTGTGGGTTCGCAGACATTGTCAACATTCTCTTAGAACACAAAGTTGACATAGACTCCTACGACTGGaacGGAGGTACCCCTCTTCTTTATGCAGTCCGTGGCAATCATATGAGGTGTGTGGAGTATCTCTTAGGTCACGGTGCTGATATTACATTCGAAGCTGACTCTGGATACAGTCCGGTGGCCCTGGCTGTTGCGCTTGGCtacaaaaaaaTGCAAAAGCTACTTGAGGACCACATTCTGAAACTGTTACGAAGCTGAACCAGATGACCAAACCACAAAGaacaattttttctttttttgtctgttcGTTCCTCTCCTTGTAAACCTTTTTAtacctttttaataaaaaatgacaaacatgTAAA

Function

symbol description
rfxank Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in MHC class II deficiency and severe combined immunodeficiency. Orthologous to human RFXANK (regulatory factor X associated ankyrin containing protein).

NR:

description
DNA-binding protein RFXANK-like

GO: NA

KEGG:

id description
K08062 RFXANK; regulatory factor X-associated ankyrin-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606696.2 False 873 mRNA 0.45 8 11762640 11767697
XM_022669608.1 True 1077 mRNA 0.45 8 11762622 11767697

Neighbor

gene id symbol gene type direction distance location
LOC103039618 cirbp,LOC107719610,LOC107655227,LOC107599461 coding upstream 389278 11366265 ~ 11373344 (+)
LOC103039314 midn,LOC108429554,LOC107655225,LOC106573601 coding upstream 561494 11176725 ~ 11201128 (+)
atp5d atp5d coding upstream 604787 11150635 ~ 11157835 (+)
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding upstream 827740 10869622 ~ 10934882 (+)
LOC103034920 NA coding upstream 901521 10756369 ~ 10861101 (+)
LOC103025613 ncan,LOC107097932,LOC103150419,LOC107554802 coding downstream 46800 11814497 ~ 12077978 (+)
trnaa-agc_12 NA coding downstream 345435 12113132 ~ 12113204 (+)
LOC103045466 LOC108429539,LOC108271013,LOC106573581,LOC107599449 coding downstream 377515 12145212 ~ 12240406 (+)
LOC103046586 LOC108429538 coding downstream 480940 12248637 ~ 12285219 (+)
LOC103046074 hmha1b,LOC108429536,LOC108271042,LOC107655244,LOC107669820 coding downstream 520220 12287917 ~ 12323072 (+)
G41842 NA non-coding upstream 40818 11721332 ~ 11721804 (+)
G41841 NA non-coding upstream 41627 11720121 ~ 11720995 (+)
G41839 NA non-coding upstream 44146 11717135 ~ 11718476 (+)
G41802 NA non-coding upstream 421508 11283237 ~ 11341114 (+)
G41732 NA non-coding upstream 719608 11042660 ~ 11043014 (+)
G41906 NA non-coding downstream 350735 12118432 ~ 12121430 (+)
G41954 NA non-coding downstream 517856 12285553 ~ 12285980 (+)
G41961 NA non-coding downstream 560198 12327895 ~ 12328238 (+)
LOC107197698 NA non-coding downstream 664330 12432027 ~ 12437339 (+)
G41975 NA non-coding downstream 686798 12454495 ~ 12456795 (+)
tmem221 tmem221 other upstream 3914 11753887 ~ 11758708 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other upstream 52939 11669447 ~ 11709683 (+)
G41828 LOC108429549,LOC108271147 other upstream 182293 11571226 ~ 11580329 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 1739658 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 2827136 8921928 ~ 8935486 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 566647 12334344 ~ 12340913 (+)
G42068 NA other downstream 865119 12632816 ~ 12633429 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other downstream 937862 12705559 ~ 12715028 (+)
G42208 ier5 other downstream 1680895 13448592 ~ 13450477 (+)
LOC103032215 NA other downstream 1741323 13509020 ~ 13522257 (+)

Expression


Co-expression Network