LOC111192498 (lrp4)


Basic Information

Item Value
gene id LOC111192498
gene name lrp4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2118643 ~ 2235758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669490.1
ggcagagtgagaggaggagtgtgagagtgagtgagtgtgtgagtgagagagaggagtgagagaaCTTCGCTCGagacttcttcttcttcttcgcaGTGAAAGAAAAGGGGAATACACGCGCTCGGGGTTCGAGCCATGATGTGAGGCGCGCGCACACCGGGGGGCTCCACTTCTTttgatgttgttgttgtttgcgGCGCGAGCTTTTGCAGAAGCgctatagaaagagagagggagagaaagagaaggagaccGCTCACACCATGCAGCCTGCAGCTCTCTCCACCACCCTAACTCTACTGCTCCTCCTGCTACAGCTGCTGCTCTGCGCGCGCGgtgTGTTGGGCAGTGCGGAGTGCTCGTGTGGGCGGAACCACTTCACCTGTGCGGTCAGTGTGTTTGGAGAGTGCACCTGCATACCAGCGCAGTGGCAGTGTGATGGAGATAATGACTGCGGGGACCACAGTGACGAGGATGGCTGCaTGTTGCCGACCTGCTCCCCCCTGGACTTCCACTGTGATAACGGGAAGTGTATCCGGCGCTCGTGGGTGTGTGATGGAGACAACGACTGTGAGGATGACTCGGATGAGCACGACTGCCctccaCGTGAGTGTGAGGAGGATGAGTTCCACTGTCAGAACGGGTACTGTATCCGCAGCCTGTGGCACTGCGATGGAGACAACGACTGCGGAGACAACAGTGATGAACAGTGTGacATGAGGAAGTGTTCGGATAAGGAGTTCCGCTGTTCAGACGGTAGCTGTATAGCCGAGCACTGGTACTGCGATGGAGACACGGACTGCAAGGACGGAACAGACGAGGAAAACTGCCCCTCAGACCTGCTGACGGCCACCTGCAGTGTTGAGGAGTTCCAGTGTGCGTACGGCCGCTGCATTCTGGACATTTACCACTGCGACGGAGACGACGACTGTGGAGACTGGTCTGATGAATCAGACTGCTcttcaCACCAGCCGTGTCGCTCGGCTGAGTTCATGTGCAGCAGTGGGATGTGCATCAATGCAGGCTGGAGGTGTGATGGAGAGTTTGACTGTGACGATCAATCAGACGAGAGCAACTGCACGATCTCGATGTGTATGGCGGATCAGTTTCGCTGTGCGTCGGGACGGTGTGTGCGGTTGTCATGGCGATGTGATGGTGAGGATGACTGCTCTGATGGCAGTGATGAAGAAGGCTGTGAAAAGACAGGAGCTCCTCCTTGTGCATCTGATCAGTTCCTGTGTGGAAACAGACGCTGCATCGGTCAGCGCAAAGTGTGTAATGAAGTAAACGACTGTGGAGACGGAACAGATGAACATCCACACCAAGACTGCCgtcccAGGTCCACTGAAGGGAACTGCAACGTGGGTAACGGCGGCTGCTCTCAGAAGTGTTTGATGAGCCGCGGTTTAGTGCAGTGCTCCTGCCACACTGGATACAAACTCTCAGACGATGGAAAAACCTGCCaagATGTGGACGAGTGTGCGAATGAGGGATACTGCAGTCAGGGCTGCACCAACACTGAGGGGGGGTTCCAGTGCTGGTGTGTTCAAGGCTACGAGCTCCGGCCCGATAAGCGCAGCTGTAAAGCTCTGGgtccgGAGCCGGTGCTGTTGTTTGCGAATCGGATTGATATCCGGCAGGTGTTGCCGCACCGCTCTGAGTACACCCTTCTGCTCAACAATCTGGAGAACGCCATCGCACTCGACTTCCACCACAGCAGAGAGCTGGTGTTCTGGTCGGACGTCACTCTGGACCGAATCATGAAGGCCAACCTGAACGGCAGTAACGTGGAGGAGGTGGTGTCTACTGGACTGGAAAGCCCAGGTGGTCTGGCCATCGACTGGATCCATGATAAGCTGTACTGGACGGATTCGGGAACGTCTCGGATCGAGGTGGCTAATCTGGACGGGACGCACCGTAAGGTTCTGATATGGCAGAGTATGGAGAAACCACGCGCAATCGCTCTGCACCCCATCGAAGGAAAGATCTACTGGACAGACTGGGGCAACACCCCCCGTATTGAGTACTCCAACATGGACGGATCCGGTCGCAGAATCATCGCAGACACTAACCTGTTCTGGCCCAACGGACTGACCATCGACTACGCTGGACACCGCATGTACTGGGTGGATGCCAAGCACCACGTCATCGAGAGGGCCGACCTGGACGGAAAGAACCGGAAAGCCGTCATCAGCCAGGgtctTCCTCATCCGTTTGCCATCACAGTGTTTGAGGATAGTCTGTACTGGACCGACTGGCACACCAAAAGCATCAACAGCGCCAACAAATTTACTGGGAAAAACCAGGAGATCATCCGCAACAAGCTTCACTTCCCCAtggacatacacacactgcaccctCAGAGACAGCCTGCAGGTGGTCGTAATCGCTGTGGGACGAATAATGGCGGCTGTAGTCACCTGTGCCTCCCCAGTAGTAAAGCGTTTACCTGTGCCTGTCCCACAGGCTTCAAAAAGGTGGACCAGTACAACTGTGCCCTGAGTCTTGACAAGTTCCTGCTTTTTGCCCGAAGGACGGACATCCGTCGGATCAGCTTCGACACCGAGGACATGTCGGATGACGTCGTCCCCCTGGCGGACGTCCGTAACGCCGTGGCGCTGGACTGGGACTCAAAAGACGGTCATATTTACTGGACCGACGTCACCACCGACTCCATCAGCCGCGCTCTGTGGAACGGATCCAAACAGGAGGTCAGTCAGACTGGCTTACTTTACTGCACAGCTCTTTTACAGAGTctttagaaatgattcagtg

Function

symbol description
lrp4 Predicted to enable calcium ion binding activity. Acts upstream of or within axon regeneration; establishment of synaptic specificity at neuromuscular junction; and neuromuscular synaptic transmission. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including actinotrichium; adaxial cell; caudal vein plexus; median fin fold; and nervous system. Used to study bone development disease. Human ortholog(s) of this gene implicated in Cenani-Lenz syndactyly syndrome; congenital myasthenic syndrome 17; and sclerosteosis 2. Orthologous to human LRP4 (LDL receptor related protein 4).

NR:

description
PREDICTED: low-density lipoprotein receptor-related protein 4 isoform X2

GO: NA

KEGG:

id description
K20051 LRP4, MEGF7; low-density lipoprotein receptor-related protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669490.1 True 2775 mRNA 0.55 18 2118643 2235758

Neighbor

gene id symbol gene type direction distance location
mapk8ip1 mapk8ip1 coding upstream 170221 1882803 ~ 1948422 (+)
slc35c1 slc35c1 coding upstream 246713 1865392 ~ 1871930 (+)
LOC103030943 NA coding upstream 282259 1809602 ~ 1836384 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding upstream 412645 1700837 ~ 1705998 (+)
sdhaf2 sdhaf2,LOC107685224 coding upstream 673420 1440755 ~ 1445223 (+)
LOC103031990 NA coding downstream 146295 2382053 ~ 2388088 (+)
LOC103032316 LOC108412978 coding downstream 156357 2392115 ~ 2406388 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding downstream 565260 2801018 ~ 2861383 (+)
zfand6 NA coding downstream 750607 2986365 ~ 3006325 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 772576 3008334 ~ 3042100 (+)
G39922 NA non-coding upstream 40637 2070099 ~ 2078006 (+)
G39914 NA non-coding upstream 96045 2022183 ~ 2022598 (+)
G39846 NA non-coding upstream 148435 1928950 ~ 1970208 (+)
G39826 NA non-coding upstream 165737 1910966 ~ 1952906 (+)
G39848 NA non-coding upstream 185831 1932146 ~ 1932812 (+)
G39942 NA non-coding downstream 141748 2377506 ~ 2377822 (+)
G39945 NA non-coding downstream 153280 2389038 ~ 2390639 (+)
G39946 NA non-coding downstream 154158 2389916 ~ 2391562 (+)
G39952 spoplb,LOC108412981,LOC103032629,LOC108270802,LOC107715774,LOC107718234,LOC107573035,LOC107551807 non-coding downstream 179014 2414772 ~ 2419056 (+)
G39943 NA non-coding downstream 183392 2419150 ~ 2425105 (+)
muc2 LOC108439647 other upstream 323711 1761227 ~ 1794932 (+)
polr2l NA other upstream 691526 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 704844 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 850258 1265857 ~ 1268385 (+)
G39626 NA other upstream 898157 1219806 ~ 1220486 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 361934 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 1146884 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 1425917 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 1601749 3837507 ~ 3856474 (+)
G40318 NA other downstream 1898752 4134510 ~ 4135585 (+)

Expression


Co-expression Network