col6a2 (col6a2,LOC107685953,LOC107718216,LOC107551805)


Basic Information

Item Value
gene id col6a2
gene name col6a2,LOC107685953,LOC107718216,LOC107551805
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8660999 ~ 8701071 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669539.1
GAGGAGGCGCAGAgagaggagcagcagcagcagcggggtCCACTCCTCACCCACTCCTCTATTCCTCCTCTTTATTCTGCTCTTTTTCACCATCCTTTACTTCCCAGCGCCTGAAACAGAAGATTACCGCAGAAATCAGAAGCTCTGAAGTAGAAGCAGAAGCTGTGACTGGGCGTGGGTGAGgaggaagaggaggatgatgCTGTTGAAGGTCATTGCACTGTGCTTCCTGTATGGAGCAGCAGTCTATGGCCAGGACTGCAACAAAAAGCCAGAATGCCCGATTGATCTGTACTTCCTCATCGATACATCGGAGACGATCGCTCTTCAGGAGAATCCTCCGGGCAGTTTGGTGGAGAGCATCAAGGACTTCACCGTTGCCTTCGCTCAGAAGCTGGAGGACATGGACTACAGAGGCCTGGTGCAGATCAGCTGGTCTGTGGGCGGCCTCCACTTCTCCATGAGGCAGGAGATCATCAGCGGCATCACCAACAAGAATGATTTCATCCAGAGGGTGAAGGCCATCCGGTACCTCGGCAAGGGCACCTTCACCGACTGCGCCATCACCAACATGACCAGAGAGATGCAGCGCGCGCCGTCCAAACCCAACGCCAAGCGCTTCGCCGTGGTGATCACAGACGGCCATGTAACCGGAAACCCCTGCGGCGGGGTGAAGGTGGCGGCAGAGCGAGCGAGGGATGAGTTTATTAAGATATTCGTCGTAGCCGCGTCCAAGAACCTGGAGGAGACGGCGCTGAGGGAGATCGCCAACTCTCCAGTCGGGGTTTACAGAAGTAACTACATGGCCGTGGATCTGACAGGAGCTCGACCCGTCATTTTAACCAAGACCATTGACCGTATCTATGAGGCTATGCTGCATCAAGCTTATCAAGAGTGCTATAGCCTCAGATGCTTGGAGACAGCTGGACCTCCTGGTCCACAGGGAAACAGGGGACAGAAAGGTGCAAAAGGAGACAACGGTGAAGCTGGTCTGAAAGGTGAAAAAGGTCGTGCTgGTGACCCCGGTATTGAAGGTCCTATTGGTCATCCTGGTCCAAAAGGAGAACCTGGTCTCAAAGGTGAAAAGGGAGAGCTTGGAACACAAGGAAGGAAGGGAGTGGCAGGGCTGTCGGGACGCAACGGAACCGATGGTCAGAAGGGTAAAATTGGACGCATCGGTGCTCCTGGCTGCAAAGGTGATGAAGGTGATAAGGGTCCTGACGGATATCCTGGAGAAGTAGGAGAGAGCGGCCTGCGTGGAGCTCCAGGAGAGAAGggAGATTCAGGTCGTCCTGGAAGACCAGGACCTACTGGCCCATCTGGCGACGGGGGTCCAAAGGGTGAAAGAGGAAGTCCAGGAACGCCGGGTCTCCCAGGTCAGAAGGGTTCTGCAGGAACACCAGGAGGACCTGGGCCAAAAGGTGACCCTGGGAGAAGAGGAGATTTCGGACCAAAGGGAGGGGAGGGTTCAGCCGGGTCAAAAGGAGAGAAGGGTGAAGCAGGTACTGAAGGTTTGAGAGGCCTCGCAGGGGAAGTTGGAAACAAAGGAACCAAGGGAGATCCAGGACTTCCAGGACCACGAGGCCCCGCAGGATCCCCCGGAGAGCCTGGAAGAAATGGTAGCCGCGGTGACTCCGGTGATGCCGGACCGAGAGGAGAGCCAGGACCCCCAGGACCAATCGGCGACTCTGGCAGACCAGGATTCAGCTACCCAGGACCAAGAGGACCCACGGGTGACCGAGGAGAGAAAGGCAGACCTGGAGCCAGAGGCAGCAGGGGAGACTGTGGACAGAAGGGAGAACCTGGACTAAAAGGACCTAATGGAGAACCTGGAGACCCTGGACCTCAGGGTGAACCTGGACCAAGAGGGCCCAAAGGAGATTCAGGAAGAGATGGTGATCCTGGTCCGGAGGGAGACGCAGGCCTTACAGAATGTGATGTCATGAACTACATCAGGGAGACCTGTGGGTGCTGTGACTGTGAGAAGAGGTGTGGAGCCCTGGATATTGTATTTGTGATTGACAGCTCAGAAAGTGTGGGATTAACCAACTTTACCCTGGAGAAGAACTTCGTCATCAACACCATCAACAGACTGGGCTCAATCGCTAAAGACCCCAACTCAGAGACCGGAACCCGTGTTGGCGTGGTCCAGTACAGTCACAGTGGCACTTTCCAGGCCATCAGCCTAAACGACACCAAGATCGATTCCCTGTCAGCTTTTAAAGACGCTGTGAAGAAGCTGGAGTGGATCGCTGGAGGCACATGGACTCCATCCGCTCTGAAATTCGCCTACGACAACATGATCCGCGACAGTCGCCGCAGCAAGGCTAAAGTAACCGTGGTGGTCATCACCGACGGTCGCTTCGACCCGCGAGACGACGACTCCCTGCTCACCTACCTCTGCACTGATAACAGCATAGATGTGAACGCCATCGGGATCGGAGACATGTTCGACCAGGTGGAGGAGAACGAGAGTCTGAAGTCCATCGCCTGCCAGAAGGAGGGAGGAGTGCTGGGCATGAGGCGCTTCGCCGACCTGGTGGCAGAGGAATTCATAGATCGAATTGAGACGGTGCTGTGCCCAGATCCTGTGGTCATCTGCCCCGATCTCCCATGCAAAACTGAGCCGGCAGTGGCCAGTTGTGTGCAGCGTCCGGTGGATCTGGTGTTCCTGCTGGACGGGTCGGAGCGGATGGGCGTGGAGAACTTCAGGAGAGCTCGTGAGTTTGTGGAGCAGGTGGCTGATCAGTTGATGTTGGCTCGGAGGGATAACGACGAGAGGAACACCCGCGTGGCTCTGCTGCAGTACGGAGACGAGGGAACTCAGGAAGTGGCTTTCAAACTCTCGCACAATATAACCGTCATCTCCGATGGCCTGGCGGGCATGAGGTACCTGGACTCCGCCTCCAACGTGGGCAGCGCCATCATGTACGCCGTCAACAACATCCTGATGAGCGGAACCAGCCGCCTGGCTCGCCGCAACGCCGAGATCTCCTTCGTCTTCATCACCGACGGCGTCACCAGCAACAAGAATCTGGAGGAGGGCCTCAGCGCCATGCGCAGGGCCGAGGGCGTGCCCACCGTTATCGCCATGGGCAGCGACGTCGACCAGGAAGTGCTGACGAAGCTCGCGCTCGGAGACCAGACAGCCATTTTCAGGGGACAGGATTACAGCCACCTCTCCAGACGCAGCTTCATTGACCGTTTCCTCCGGTGGATCTGCTGAAAATGGGGGGGATCTTAAGCTCACACTAGTGGAGGGGGGTAAATAGTTTTATTGGTGTGTTACTGGAGTCAGCCTGGTCATTAGGatgcaacaaaaagaaaatttgtGGCTAAACAATATGCTGATCAAACACCTAATACTGTTCGCCAATGTTTTACACcacattaaaaagccttttgttttatgaagaaaaacatgatttttaactgaaagtgtgtttttttttttttagaataaattgtGAATCCATACTTAATACTTAGTTAATACTTAATTAATATTAGTTTGTCATTTTGCTAATATTTCCCACGCTCTTGACTCTCTTGTAATGAAAAATAGAGGTAGCAACTTAgcctacgttcacattacaagtagggctgcaatgattagtcgatataatcgacaatgtcgattatttaagtttgtcgactacaaatttcattgtcgactaatcgttcatTTATAACAGATATAACTcacatttaatcactaaatGTTGTTATCttacacatttaaacagcagccatggcttttaaatctcatgttcagccaTTTCTATAGTTtctagagatggaggacatggcagaaataatcgttgactaatcgactaatctgaaaaaataatcatcagattaccaaaatactactaaaataatcattagttgcagcccgaATTACAAGCTACATTAAATAGCGTGGAGAAGTAAAGGGCGTGGATCAGTCTcccaaaattaaattatattcatGAACTTTAACGCAGTAAAAGTCAAAAAAGTGTCAAATCAAAGAACGAGGACGTTTTTGGATTTAAATTACATGAAAAAAAGACTCACTTCATatgttttcatatattttaaagtttgctGAATCACTCCCACACTATAATCACAGAATTCAGTTCCACTAACCAGAGTCGCGTTTGTCTAATAAGTGTAAACAAACACATGTAGCTAAAATCTAAATCAGGATAGAATCCAGATTCTGATCACATTAAGTGCTCAAGTGTAAACAGGGAAAGTGTGCTATGTGATCTGGTGAGTTGCATCCTCATCAGCAAGCTCACTCCATATAACACACCAGTGGACATGGGATAAGGGGGCAGGatgcagaaaataaaaggtaataataaaagataaaaacaccaaagaTAATTTACTGAATGTTAAACTttttgaaaaagtttttttttttatttctaaatgttctgtttttgaAGAAGGCTCTACCTGAATCGTTTTGTATTCACACCAAAGGTGCTAAACCAGAGCAAGACTGGAGTTTTTCCTGTATATCTTTGAAGAGGTTTTCATGGGTTGTTGAATTTCAGCTGAAatcattcaataaataaaataattcagggTTAAATGAACGAAGCCATTTAGACTAAAGCACATCGCAAGTATTACATATCTCAGCTTCGGATCTAGTTGCCTCAATATGTTGCACTAGACTGGGTTTCAGTTAGAATAGTTTCAGGTCTGAAGGATAAGATACCAGCAGCACAGCTTGAATATATGAACTGTATTATCAAAAACATTCTCAGCTGAGGATTTAACTCATTACttactctgccctgaagccatGCTGAAAATATCGAACTGTGGGTCAAttataacagtaaaaacagcatTTCCCAGggtgttcattttttattttcccaacaAAACCACTTGAATCATGTCGAGCTGCAAATTCATTAAGTACAAACATCCAATGCTGGACTTGAAGGGAGTATTAATATAATTAGGGAAACCAGTAAACTGTGCTGTGGAGTCTAGAGGCAATCACACCAAACTGTGCCCGAGCATGGTGCATGGTTCCTGATAAACATGGTGGTGTTGTCGCAAATTCAGCAaaccccgccaggaaaagcacctccTCTCATGACTGAGATAACTGTGACTTTTGTCTCGTATTTctaagttaaattaaagcagatTATCACCGCTTTTATCATTAACAAAGTGCAAGACATGctcctgagagagggtgcttttcatggcgggggggCTAAAATTGGCATAACACTGAGTagcccactgagcagtgagtaatGACGTACTAAGAAATGCACGCTACCCCGGCTGCAGCCTATACTTTAGAAACCAGCCTCAGATCAACCTGTAACTCAACTGTACTCCAAGTTTAAATATTCcgatcatatttttaaaatatctttcCAGATCTACCACAAGAGCCCAGTCAGACCACAGCTTTTCCTCCAGTCACAGGAAATCTCTTTACCTGTAACTCTTGCTTTGACACATGCTCGTGACAGGGAATCAAATGTTCGTATTAAATGAAGTATTCAAAGTATGTCCACATACTTATGTATGAAGAGCAAAATGACCACAAcagataatgataaaaaataatgttaattgttttttttttcgtcttttAAGAGCACTGTAATCAGATGTAGTCAGTAAATTCTAGGCTGCCATGATGGTGAAATGAGTATTTTGACATGCTGTAGGACATCTGAAGGATGGACCTCATTATTGTTTTGTCAACTTCAGtgttagtacaataaaacaGGCTGTGGTAAACTACAAA
>XM_022669540.1
GAGAGGAGGCGCAGAgagaggagcagcagcagcagcggggtCCACTCCTCACCCACTCCTCTATTCCTCCTCTTTATTCTGCTCTTTTTCACCATCCTTTACTTCCCAGCGCCTGAAACAGAAGATTACCGCAGAAATCAGAAGCTCTGAAGTAGAAGCAGAAGCTGTGACTGGGCGTGGGTGAGgaggaagaggaggatgatgCTGTTGAAGGTCATTGCACTGTGCTTCCTGTATGGAGCAGCAGTCTATGGCCAGGACTGCAACAAAAAGCCAGAATGCCCGATTGATCTGTACTTCCTCATCGATACATCGGAGACGATCGCTCTTCAGGAGAATCCTCCGGGCAGTTTGGTGGAGAGCATCAAGGACTTCACCGTTGCCTTCGCTCAGAAGCTGGAGGACATGGACTACAGAGGCCTGGTGCAGATCAGCTGGTCTGTGGGCGGCCTCCACTTCTCCATGAGGCAGGAGATCATCAGCGGCATCACCAACAAGAATGATTTCATCCAGAGGGTGAAGGCCATCCGGTACCTCGGCAAGGGCACCTTCACCGACTGCGCCATCACCAACATGACCAGAGAGATGCAGCGCGCGCCGTCCAAACCCAACGCCAAGCGCTTCGCCGTGGTGATCACAGACGGCCATGTAACCGGAAACCCCTGCGGCGGGGTGAAGGTGGCGGCAGAGCGAGCGAGGGATGAGTTTATTAAGATATTCGTCGTAGCCGCGTCCAAGAACCTGGAGGAGACGGCGCTGAGGGAGATCGCCAACTCTCCAGTCGGGGTTTACAGAAGTAACTACATGGCCGTGGATCTGACAGGAGCTCGACCCGTCATTTTAACCAAGACCATTGACCGTATCTATGAGGCTATGCTGCATCAAGCTTATCAAGAGTGCTATAGCCTCAGATGCTTGGAGACAGCTGGACCTCCTGGTCCACAGGGAAACAGGGGACAGAAAGGTGCAAAAGGAGACAACGGTGAAGCTGGTCTGAAAGGTGAAAAAGGTCGTGCTgGTGACCCCGGTATTGAAGGTCCTATTGGTCATCCTGGTCCAAAAGGAGAACCTGGTCTCAAAGGTGAAAAGGGAGAGCTTGGAACACAAGGAAGGAAGGGAGTGGCAGGGCTGTCGGGACGCAACGGAACCGATGGTCAGAAGGGTAAAATTGGACGCATCGGTGCTCCTGGCTGCAAAGGTGATGAAGGTGATAAGGGTCCTGACGGATATCCTGGAGAAGTAGGAGAGAGCGGCCTGCGTGGAGCTCCAGGAGAGAAGggAGATTCAGGTCGTCCTGGAAGACCAGGACCTACTGGCCCATCTGGCGACGGGGGTCCAAAGGGTGAAAGAGGAAGTCCAGGAACGCCGGGTCTCCCAGGTCAGAAGGGTTCTGCAGGAACACCAGGAGGACCTGGGCCAAAAGGTGACCCTGGGAGAAGAGGAGATTTCGGACCAAAGGGAGGGGAGGGTTCAGCCGGGTCAAAAGGAGAGAAGGGTGAAGCAGGTACTGAAGGTTTGAGAGGCCTCGCAGGGGAAGTTGGAAACAAAGGAACCAAGGGAGATCCAGGACTTCCAGGACCACGAGGCCCCGCAGGATCCCCCGGAGAGCCTGGAAGAAATGGTAGCCGCGGTGACTCCGGTGATGCCGGACCGAGAGGAGAGCCAGGACCCCCAGGACCAATCGGCGACTCTGGCAGACCAGGATTCAGCTACCCAGGACCAAGAGGACCCACGGGTGACCGAGGAGAGAAAGGCAGACCTGGAGCCAGAGGCAGCAGGGGAGACTGTGGACAGAAGGGAGAACCTGGACTAAAAGGACCTAATGGAGAACCTGGAGACCCTGGACCTCAGGGTGAACCTGGACCAAGAGGGCCCAAAGGAGATTCAGGAAGAGATGGTGATCCTGGTCCGGAGGGAGACGCAGGCCTTACAGAATGTGATGTCATGAACTACATCAGGGAGACCTGTGGGTGCTGTGACTGTGAGAAGAGGTGTGGAGCCCTGGATATTGTATTTGTGATTGACAGCTCAGAAAGTGTGGGATTAACCAACTTTACCCTGGAGAAGAACTTCGTCATCAACACCATCAACAGACTGGGCTCAATCGCTAAAGACCCCAACTCAGAGACCGGAACCCGTGTTGGCGTGGTCCAGTACAGTCACAGTGGCACTTTCCAGGCCATCAGCCTAAACGACACCAAGATCGATTCCCTGTCAGCTTTTAAAGACGCTGTGAAGAAGCTGGAGTGGATCGCTGGAGGCACATGGACTCCATCCGCTCTGAAATTCGCCTACGACAACATGATCCGCGACAGTCGCCGCAGCAAGGCTAAAGTAACCGTGGTGGTCATCACCGACGGTCGCTTCGACCCGCGAGACGACGACTCCCTGCTCACCTACCTCTGCACTGATAACAGCATAGATGTGAACGCCATCGGGATCGGAGACATGTTCGACCAGGTGGAGGAGAACGAGAGTCTGAAGTCCATCGCCTGCCAGAAGGAGGGAGGAGTGCTGGGCATGAGGCGCTTCGCCGACCTGGTGGCAGAGGAATTCATAGATCGAATTGAGACGGTGCTGTGCCCAGATCCTGTGGTCATCTGCCCCGATCTCCCATGCAAAACTGATGTGGCGTCCCAGTGGAATGGGTTCTTTGCAGAGGAAGGGAGGGACAACCCCATCCCGAGCACAATATCGAGcatctcagtgtttctcagctCCCTGCAGGAGCCCAAGCACCCCGATAGCTACAGCAAGGCTGTAGCCACAATGGCCTACACAGCCCAGAGAGCCAAGTTCGCCAACGGACCCGAGAAACAGCAGTGGACTGATCTGTTCATTGACTCTTTCAGATTTGTCTATGGCGACATCATGGGCGATCCTAACAAAGTGCTGGGGCTGTGTTAGAGAGCGCTGGCTCCTGATTCGGCCAAACTCGGCCAATAAATTACGGCTatggctttatatatatatgttttttttaacattgacgATTAGTTGCTCTTGGCCTTGATGTATAGTaggattattaaaaaaatatatgtcttGATAACCACTAAATATATCTGAAAGCTAGCTGGTCTACGCATGGttgtaacattttatttgaagttTGATTATTAGTTTTAACCCTGACTAAAAAGTGGTAGATAACATTGTTATGAGAGATGTGTTCGATTCCAAAAGAAAGTGGTGATGACTTACTAACACAAAACGCCCagttaaacaaacaataataagcATGACATTTGCTAACATGCTAATTTCTGCTAACCTTTCCTTTTATATTTGGGTAAAAGTGGCCTAAATCCAAtctataatctaatataatcttTTCTCTGATACTGTCTGTGATGCAGATGTGGTATGCAGTTTGACAATCTGATGCATATTCGATTTGTGACAATGCAGAACAGGCAAAACAGACAGATTTTAGAAGAAGGAGAGTAGAAAGATGGGTGTAAGTAGAATTGGGAAATGGACAACAGCTTTGAGTGAGGGTTTCATTGGTGTGATACTGAAAGAACAGACCTCATAAATGCAGTATTTGGACTGATATCTCTGTTCAAACTGAATTAGTAGAAGTCTCGTGTTGCAATcaaatccgtgtatcattcgttcattcagaaaaaaacaacaacattaaaatatattatt

Function

symbol description
col6a2 Acts upstream of or within axonogenesis; muscle cell development; and muscle organ development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including anterior segment eye; gut; integument; musculature system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL6A2 (collagen type VI alpha 2 chain).

NR:

description
PREDICTED: collagen alpha-2(VI) chain

GO: NA

KEGG:

id description
K06238 COL6A; collagen type VI alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669539.1 True 5785 mRNA 0.48 28 8661001 8701071
XM_022669540.1 False 3657 mRNA 0.51 28 8660999 8693477

Neighbor

gene id symbol gene type direction distance location
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding upstream 24521 8551970 ~ 8636478 (+)
atp13a3 atp13a3,LOC106613657 coding upstream 162060 8459515 ~ 8498939 (+)
tmem44 NA coding upstream 260142 8382256 ~ 8400857 (+)
lsg1 lsg1,LOC107715771,LOC107736209 coding upstream 283174 8361837 ~ 8377825 (+)
xxylt1 xxylt1 coding upstream 498041 8102275 ~ 8162958 (+)
LOC103028050 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding downstream 1371 8702442 ~ 8716742 (+)
LOC103026226 LOC108439428 coding downstream 127017 8828088 ~ 8919744 (+)
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding downstream 241771 8942842 ~ 8986586 (+)
mcf2l2 LOC108439422,LOC108270998 coding downstream 297079 8998150 ~ 9104845 (+)
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding downstream 428787 9129858 ~ 9187127 (+)
G40989 NA non-coding upstream 138590 8521281 ~ 8522409 (+)
G40984 NA non-coding upstream 149387 8504618 ~ 8511612 (+)
G40986 NA non-coding upstream 156689 8502870 ~ 8504310 (+)
G40985 NA non-coding upstream 158257 8500914 ~ 8502742 (+)
G40987 NA non-coding upstream 160935 8499763 ~ 8500064 (+)
G41040 NA non-coding downstream 62078 8763149 ~ 8765880 (+)
LOC111192503 NA non-coding downstream 68983 8770054 ~ 8771261 (+)
G41087 NA non-coding downstream 103913 8804984 ~ 8805203 (+)
G41099 ncbp2 non-coding downstream 236347 8937418 ~ 8942071 (+)
G41097 NA non-coding downstream 253732 8954803 ~ 8988103 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 136686 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 834085 7826523 ~ 7826914 (+)
G40756 NA other upstream 2127325 6533365 ~ 6533674 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other upstream 3348655 5305687 ~ 5312344 (+)
LOC103046723 LOC108439632 other upstream 4145388 4504397 ~ 4515611 (+)
LOC103027717 LOC108428455 other downstream 17489 8718560 ~ 8762792 (+)
LOC103022991 NA other downstream 220857 8921928 ~ 8935486 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 1294638 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 2870155 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 2968376 11669447 ~ 11709683 (+)

Expression


Co-expression Network