LOC103028050 (zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385)


Basic Information

Item Value
gene id LOC103028050
gene name zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8702442 ~ 8716742 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669541.1
TTTATTGGCTGTTCTTCTCATCGCTCAGTGGCTGTGGGCCAATCAGAAGAGGGATTCCTGTAACGCCCCTCCTCCTGTGTGCCTGGGTTCAGAGAGTGGAGGGATACCGAGAGGAGAATTCTGCACCATGGCCGGACTCACCATGGCGGATCTCAGTACTCCAGCTCTGCTGCTGGATCTGGAGATCGTGCAGAGGAACGCCAGGCTGATGTTGGATCGATGCCAGAAGCTCGGAGTTCAGCTCAGACCCCATATGAAGACCCATAAAACCCTGGAGTGTGCAGATATCATGACGGGTGGGTCTCGGCGCTGCATCGTGGTGTCCACTCTGGCCGAGGCGTCGTTCTACGCTGATCGCGGTTATGATGATATCCTCTACGCATACCCGCTGCCCTTCGATAAGGTGGAGCGCTGTGCTCAGCTATCAGAGCGGCTCTCTCTGTTCCACGTGCTGCTGGACAACAGCCTCGCCCTGCAGCAACTGAAGAAGAGACCACTGAGCCACGGCAAGATCTGGCACGTCTGGATGAAGCTGGACTGTGATAATGGTAGAGctggtgTTCCTCACTCTGAGCCTGCTGCTCTGAAGTTGGCGCAGGAAATCTCAGAGACAGCGGGGGTGGAGCTTACAGGAATCTACGCCCACTGCGGGAACACCTACGGCTGTAAAGGGGAGGAGCAAATCAAGGCTGTTGCCCAACAAACTACAGCAATCACGCTACAGTTCATGGAGAAACTAAAAGCTATAGGGATCCAGGGCCCCAAATCCAGCATTGGCTCCACCCCTTCCTGTAGTCACCCGGTCCCGGAGATGGCGATGTTAAGTGAGGTCCATCCTGGAAACTATGTGTTTTATGacgtGCAGCAGTCTCTCATTGGCTCCTGTAAACTTGAGGATGTTGCAGTACGGGTGCTGACAAGGGTCATAGGTCACTACCCACACAGAAATCAGTTACTGGTGGACTGTGGCTGGACAGCTCTGAGTCTTGATGGTGGAGGACGTTTACCTACAGGATATGCCATCATCGAGGGGCATCCAGAACTAAAACTGACCTCCATGACCCAGGAGCACGGCAGGGTGGAGCCAATCTCTGGAGAGCTGGATTTTAGTCAGTTTCCTCTGGGATCAGTGCTCACCTTTATTCCTCACCATGCTTGTGCTACAGCTGCAATGCATCCAGTTTATTATGTCCACTCCAAAGGGAAGATAGTGGACACTTGGAAACCCACTCGCGGATGGTAAAGAGCCAAGGAACAGTGTGAATTAATCTGTCAGAATTAATGAGTAAATTAACACTAATTTCACTGTAAGAAATTACTAGAACTTCTTTATTAAATGACATGTGGAGACATGGTGTGATCATTTGTTAAACTAATTAATGTATATTACATTCAATGCAAATATCAATACAAACACTTGTGTGCTTGCAGTACATCTGTATTGTACTGTTATATATCTCTTCTCTATATCTGTtttctataataataaagtaaatgtgattaaatgtaCTAATTCAAGATTTACAatgattttactaaataataaaaatatatattaaaaaacaaaa
>XM_022669542.1
AATCTCCGGTAATCAGCGCGCTCTCAGGCTGGGGGTGGGGGTCTGCGGGGTTACCGGGCGGTCCGGTTCGGGCGGCTGTTTCTCAGGGAGCAGTATAAATTCTGCACCATGGCCGGACTCACCATGGCGGATCTCAGTACTCCAGCTCTGCTGCTGGATCTGGAGATCGTGCAGAGGAACGCCAGGCTGATGTTGGATCGATGCCAGAAGCTCGGAGTTCAGCTCAGACCCCATATGAAGACCCATAAAACCCTGGAGTGTGCAGATATCATGACGGGTGGGTCTCGGCGCTGCATCGTGGTGTCCACTCTGGCCGAGGCGTCGTTCTACGCTGATCGCGGTTATGATGATATCCTCTACGCATACCCGCTGCCCTTCGATAAGGTGGAGCGCTGTGCTCAGCTATCAGAGCGGCTCTCTCTGTTCCACGTGCTGCTGGACAACAGCCTCGCCCTGCAGCAACTGAAGAAGAGACCACTGAGCCACGGCAAGATCTGGCACGTCTGGATGAAGCTGGACTGTGATAATGGTAGAGctggtgTTCCTCACTCTGAGCCTGCTGCTCTGAAGTTGGCGCAGGAAATCTCAGAGACAGCGGGGGTGGAGCTTACAGGAATCTACGCCCACTGCGGGAACACCTACGGCTGTAAAGGGGAGGAGCAAATCAAGGCTGTTGCCCAACAAACTACAGCAATCACGCTACAGTTCATGGAGAAACTAAAAGCTATAGGGATCCAGGGCCCCAAATCCAGCATTGGCTCCACCCCTTCCTGTAGTCACCCGGTCCCGGAGATGGCGATGTTAAGTGAGGTCCATCCTGGAAACTATGTGTTTTATGacgtGCAGCAGTCTCTCATTGGCTCCTGTAAACTTGAGGATGTTGCAGTACGGGTGCTGACAAGGGTCATAGGTCACTACCCACACAGAAATCAGTTACTGGTGGACTGTGGCTGGACAGCTCTGAGTCTTGATGGTGGAGGACGTTTACCTACAGGATATGCCATCATCGAGGGGCATCCAGAACTAAAACTGACCTCCATGACCCAGGAGCACGGCAGGGTGGAGCCAATCTCTGGAGAGCTGGATTTTAGTCAGTTTCCTCTGGGATCAGTGCTCACCTTTATTCCTCACCATGCTTGTGCTACAGCTGCAATGCATCCAGTTTATTATGTCCACTCCAAAGGGAAGATAGTGGACACTTGGAAACCCACTCGCGGATGGTAAAGAGCCAAGGAACAGTGTGAATTAATCTGTCAGAATTAATGAGTAAATTAACACTAATTTCACTGTAAGAAATTACTAGAACTTCTTTATTAAATGACATGTGGAGACATGGTGTGATCATTTGTTAAACTAATTAATGTATATTACATTCAATGCAAATATCAATACAAACACTTGTGTGCTTGCAGTACATCTGTATTGTACTGTTATATATCTCTTCTCTATATCTGTtttctataataataaagtaaatgtgattaaatgtaCTAATTCAAGATTTACAatgattttactaaataataaaaatatatattaaaaaacaaaa

Function

symbol description
zgc:162816 Predicted to enable D-serine ammonia-lyase activity. Predicted to be involved in D-serine catabolic process.

NR:

description
PREDICTED: D-threo-3-hydroxyaspartate dehydratase-like isoform X1

GO: NA

KEGG:

id description
K20498 DSD1; D-serine ammonia-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669541.1 True 1568 mRNA 0.48 8 8702442 8716742
XM_022669542.1 False 1549 mRNA 0.48 8 8702617 8716742

Neighbor

gene id symbol gene type direction distance location
col6a2 col6a2,LOC107685953,LOC107718216,LOC107551805 coding upstream 1371 8660999 ~ 8701071 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding upstream 65964 8551970 ~ 8636478 (+)
atp13a3 atp13a3,LOC106613657 coding upstream 203503 8459515 ~ 8498939 (+)
tmem44 NA coding upstream 301585 8382256 ~ 8400857 (+)
lsg1 lsg1,LOC107715771,LOC107736209 coding upstream 324617 8361837 ~ 8377825 (+)
LOC103026226 LOC108439428 coding downstream 111346 8828088 ~ 8919744 (+)
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding downstream 226100 8942842 ~ 8986586 (+)
mcf2l2 LOC108439422,LOC108270998 coding downstream 281408 8998150 ~ 9104845 (+)
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding downstream 413116 9129858 ~ 9187127 (+)
ect2 ect2,LOC107674529,LOC107718889 coding downstream 477443 9194185 ~ 9255897 (+)
G40989 NA non-coding upstream 180033 8521281 ~ 8522409 (+)
G40984 NA non-coding upstream 190830 8504618 ~ 8511612 (+)
G40986 NA non-coding upstream 198132 8502870 ~ 8504310 (+)
G40985 NA non-coding upstream 199700 8500914 ~ 8502742 (+)
G40987 NA non-coding upstream 202378 8499763 ~ 8500064 (+)
G41040 NA non-coding downstream 46407 8763149 ~ 8765880 (+)
LOC111192503 NA non-coding downstream 53312 8770054 ~ 8771261 (+)
G41087 NA non-coding downstream 88242 8804984 ~ 8805203 (+)
G41099 ncbp2 non-coding downstream 220676 8937418 ~ 8942071 (+)
G41097 NA non-coding downstream 238061 8954803 ~ 8988103 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 178129 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 875528 7826523 ~ 7826914 (+)
G40756 NA other upstream 2168768 6533365 ~ 6533674 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other upstream 3390098 5305687 ~ 5312344 (+)
LOC103046723 LOC108439632 other upstream 4186831 4504397 ~ 4515611 (+)
LOC103027717 LOC108428455 other downstream 1818 8718560 ~ 8762792 (+)
LOC103022991 NA other downstream 205186 8921928 ~ 8935486 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 1278967 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 2854484 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 2952705 11669447 ~ 11709683 (+)

Expression


Co-expression Network