mcf2l2 (LOC108439422,LOC108270998)


Basic Information

Item Value
gene id mcf2l2
gene name LOC108439422,LOC108270998
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8998150 ~ 9104845 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669560.1
CCTCTGGGAAAGCAGAGCACAGCAGTGTGTTCAGGATCAGGAGCTGCTCAAACTCCTCTTTTCTCCATATCCTTTCCTGTGCTCAGAATGAATGATTAACATTAGGACCTACACACTGAGAACCGCATCACTCCGGATCCagctcagcctcagcctcagcctcagcctctcctcctcctcctcatccatccatccatacatacactgctgctgctgctgctgctgatcacCGGCGGGGAGTGGCCGCTGCTTTGTGTGAGCGGGGGGAGCCCTGTGTGCtgcaggaggagaggaggaggagagggggagaggagaggaggatagaggaggagaggctGCCCCTGAGATGCTCTGCTGGCTGGAAGAGGAAGAGATGTCTGTGCAGGAGTTCCTGGAAAGGGTGGGCTCTGTGATCACCCATGTCGATGAGATTATGCAGCAGGAGATACGGCCGCTGCTGGCTGTGGATATCATCGAGCAGCTTCACAGGCAGTTCGCTCTGCTCTCAGgaggaagaggaaaggATGGCGCCCCCATCATCACCTTCCCCGAGTACTCTGACTTCAGTGAGCTTCCTGAGGAGGATTTTATTAATGTAGTTACATATCTCACCAGCATACCCAGTCTGGACGCGGCCAGTATCGGCTTCATAATTATCATAGACCGCAGGCGGGACAAATGGAGTTCGGTGAAAGCCTCGTTGGCTCGAATAGCAGGGGCGTTCCCTGGCAACCTGCAGCTGGTCCTGGTGCTGAGGCCCTCGCGTTTCTTCCAAAGAGCTATAGCTGACATCGGCATCCGATTACACCGCGATGACTTTAAAATGAAGGTACCGATCGTCatgctgaactctctctcaGATCTGCACGGCTACATCGACAAGGCTCAGCTGACCTGTGAGCTGGGGGGCAGTCTGCAGTACTGTCACAGTCAGTGGATTCACCATCGCACAGCTATTGAAAACTTTGCGGTGACGGTGAAAAGCACAGCGCAGATGCTGCAGAAGTTTGGAACAGATTTGGCAGAAACTGAACTCCCCAATGATGTGCAGTGCACCAAAGATCTGCTGACGTCTCACACAGAGAAACACGATAAACTCAAGGATGAACTAAAGTTAGCATTGAAACAAGGAAGCACTCTGTTGTCTTGCATCAAAGACCTGGCCAATAAAACCGAAAACCACAAGCTGAACCCAGATGAAACGGAAAATCAGACCACTGTTGAAAGGTTGCTGGCTCAGTTGGATGAGACTGAAAATGCTTTTGAACAGTTCTGGTCCAAACATCATCTAAAGTTAGAGCAGTGTTTGCAGCTCAGGCACTTCGAGCAGGACTTTAGAGAGgtaaaAGTGTCGTTGGACAGTCTGATGGAGGATTTGCTGAAGCTCACAGACATCGGGGACTGTGTTAGTCGTGTGGTTCAGCTGCTGAAAGAACTGAAGAGTCTAGAGGACAGTGCTCAGGAGTCTTTGGAGAAGGCGCAGCTGCATGCCCTGCATGGAGACCAGCTCATCCAGAGCAACCACTACGCTGTGGATTCCATCCGGCCCAAATGCGTGGAGCTGCGACGCATCTGTGACGACTTCAGCAACGAGTCCAAGAAGAAATACGACATCCTGTCCAAATCACTGGAGATCCATACAGGCATGGACAAGgTTAACCACTGGTGTGAGAGTGGAGTGTATCTAATGGCGTCTCAGGCTGTGGATAAGTGCCAGTCTCAGGAGGGTGCGGAGGCGGCACTGCAGGACATCCAGAAGTACATGGATTCAGCCAGGGAGCAGCAGCTCAGTCAGCTAAAAGACCTGTACAACCAGCACGAGATCATCCTGTCTGATCACATAAAGATTAACGTGCAGAGCGCTTTAAAGAGGCTGGATGAAGTTCAAGAGATGTTTGAGAAGAGGCACATCAGCCTAAAGAGGCTTTCAGCTAAGCAGAGCAGACCTGTGCAGCCTGTGGCTCCACGACCTGAATCTTCACCCAAGCGTCCTTCACCCAAAACCCCACGACCTTCCGGCCCAGGTTAGTAAACGGAGCAGCTTTCACTGGAAACAGAATCTGTTTCACAGTGTCTGACCACAAACTGAAACACATGTAACATCTATCTGCTTAGTGCAGTTACAACAACAGACATCTATTCAACTTTTACTACTGCtaccttttcattttttttttgttaaaatggatatt
>XM_022669561.1
CTCTGGGAAAGCAGAGCACAGCAGTGTGTTCAGGATCAGGAGCTGCTCAAACTCCTCTTTTCTCCATATCCTTTCCTGTGCTCAGAATGAATGATTAACATTAGGACCTACACACTGAGAACCGCATCACTCCGGATCCagctcagcctcagcctcagcctcagcctctcctcctcctcctcatccatccatccatacatacactgctgctgctgctgctgctgatcacCGGCGGGGAGTGGCCGCTGCTTTGTGTGAGCGGGGGGAGCCCTGTGTGCtgcaggaggagaggaggaggagagggggagaggagaggaggatagaggaggagaggctGCCCCTGAGATGCTCTGCTGGCTGGAAGAGGAAGAGATGTCTGTGCAGGAGTTCCTGGAAAGGGTGGGCTCTGTGATCACCCATGTCGATGAGATTATGCAGCAGGAGATACGGCCGCTGCTGGCTGTGGATATCATCGAGCAGCTTCACAGGCAGTTCGCTCTGCTCTCAGgaggaagaggaaaggATGGCGCCCCCATCATCACCTTCCCCGAGTACTCTGACTTCAGTGAGCTTCCTGAGGAGGATTTTATTAATGTAGTTACATATCTCACCAGCATACCCAGTCTGGACGCGGCCAGTATCGGCTTCATAATTATCATAGACCGCAGGCGGGACAAATGGAGTTCGGTGAAAGCCTCGTTGGCTCGAATAGCAGGGGCGTTCCCTGGCAACCTGCAGCTGGTCCTGGTGCTGAGGCCCTCGCGTTTCTTCCAAAGAGCTATAGCTGACATCGGCATCCGATTACACCGCGATGACTTTAAAATGAAGATCGTCatgctgaactctctctcaGATCTGCACGGCTACATCGACAAGGCTCAGCTGACCTGTGAGCTGGGGGGCAGTCTGCAGTACTGTCACAGTCAGTGGATTCACCATCGCACAGCTATTGAAAACTTTGCGGTGACGGTGAAAAGCACAGCGCAGATGCTGCAGAAGTTTGGAACAGATTTGGCAGAAACTGAACTCCCCAATGATGTGCAGTGCACCAAAGATCTGCTGACGTCTCACACAGAGAAACACGATAAACTCAAGGATGAACTAAAGTTAGCATTGAAACAAGGAAGCACTCTGTTGTCTTGCATCAAAGACCTGGCCAATAAAACCGAAAACCACAAGCTGAACCCAGATGAAACGGAAAATCAGACCACTGTTGAAAGGTTGCTGGCTCAGTTGGATGAGACTGAAAATGCTTTTGAACAGTTCTGGTCCAAACATCATCTAAAGTTAGAGCAGTGTTTGCAGCTCAGGCACTTCGAGCAGGACTTTAGAGAGgtaaaAGTGTCGTTGGACAGTCTGATGGAGGATTTGCTGAAGCTCACAGACATCGGGGACTGTGTTAGTCGTGTGGTTCAGCTGCTGAAAGAACTGAAGAGTCTAGAGGACAGTGCTCAGGAGTCTTTGGAGAAGGCGCAGCTGCATGCCCTGCATGGAGACCAGCTCATCCAGAGCAACCACTACGCTGTGGATTCCATCCGGCCCAAATGCGTGGAGCTGCGACGCATCTGTGACGACTTCAGCAACGAGTCCAAGAAGAAATACGACATCCTGTCCAAATCACTGGAGATCCATACAGGCATGGACAAGgTTAACCACTGGTGTGAGAGTGGAGTGTATCTAATGGCGTCTCAGGCTGTGGATAAGTGCCAGTCTCAGGAGGGTGCGGAGGCGGCACTGCAGGACATCCAGAAGTACATGGATTCAGCCAGGGAGCAGCAGCTCAGTCAGCTAAAAGACCTGTACAACCAGCACGAGATCATCCTGTCTGATCACATAAAGATTAACGTGCAGAGCGCTTTAAAGAGGCTGGATGAAGTTCAAGAGATGTTTGAGAAGAGGCACATCAGCCTAAAGAGGCTTTCAGCTAAGCAGAGCAGACCTGTGCAGCCTGTGGCTCCACGACCTGAATCTTCACCCAAGCGTCCTTCACCCAAAACCCCACGACCTTCCGGCCCAGGTTAGTAAACGGAGCAGCTTTCACTGGAAACAGAATCTGTTTCACAGTGTCTGACCACAAACTGAAACACATGTAACATCTATCTGCTTAGTGCAGTTACAACAACAGACATCTATTCAACTTTTACTACTGCtaccttttcattttttttttgttaaaatggatatt
>XM_022669562.1
AAAAGTGACCAAAGCCCTTCAGACGCTTCCCACAAATATGCGTCTGCTGCCAGCGCTCCGGCACAGCTGCCGGCTCCCACAGCAAGACTGAGCGacgggagagagagggggagagaaagagagagtcaaagagaaagagagagagagagagagcaggatgaAGACAGGAGAGAAAACTTCACAAGTTTATCCTGGCAAACCCTTATGCCTTTCCTCCAGCGGGATTTGACGTTCTTGGTTTGGTGGTGGATCTGAGCTGCTGGGCTCTGCAGTCCGGACATCATGCTCAAACGGCCCAGACAAGTTATAGATGAGATTATGCAGCAGGAGATACGGCCGCTGCTGGCTGTGGATATCATCGAGCAGCTTCACAGGCAGTTCGCTCTGCTCTCAGgaggaagaggaaaggATGGCGCCCCCATCATCACCTTCCCCGAGTACTCTGACTTCAGTGAGCTTCCTGAGGAGGATTTTATTAATGTAGTTACATATCTCACCAGCATACCCAGTCTGGACGCGGCCAGTATCGGCTTCATAATTATCATAGACCGCAGGCGGGACAAATGGAGTTCGGTGAAAGCCTCGTTGGCTCGAATAGCAGGGGCGTTCCCTGGCAACCTGCAGCTGGTCCTGGTGCTGAGGCCCTCGCGTTTCTTCCAAAGAGCTATAGCTGACATCGGCATCCGATTACACCGCGATGACTTTAAAATGAAGGTACCGATCGTCatgctgaactctctctcaGATCTGCACGGCTACATCGACAAGGCTCAGCTGACCTGTGAGCTGGGGGGCAGTCTGCAGTACTGTCACAGTCAGTGGATTCACCATCGCACAGCTATTGAAAACTTTGCGGTGACGGTGAAAAGCACAGCGCAGATGCTGCAGAAGTTTGGAACAGATTTGGCAGAAACTGAACTCCCCAATGATGTGCAGTGCACCAAAGATCTGCTGACGTCTCACACAGAGAAACACGATAAACTCAAGGATGAACTAAAGTTAGCATTGAAACAAGGAAGCACTCTGTTGTCTTGCATCAAAGACCTGGCCAATAAAACCGAAAACCACAAGCTGAACCCAGATGAAACGGAAAATCAGACCACTGTTGAAAGGTTGCTGGCTCAGTTGGATGAGACTGAAAATGCTTTTGAACAGTTCTGGTCCAAACATCATCTAAAGTTAGAGCAGTGTTTGCAGCTCAGGCACTTCGAGCAGGACTTTAGAGAGgtaaaAGTGTCGTTGGACAGTCTGATGGAGGATTTGCTGAAGCTCACAGACATCGGGGACTGTGTTAGTCGTGTGGTTCAGCTGCTGAAAGAACTGAAGAGTCTAGAGGACAGTGCTCAGGAGTCTTTGGAGAAGGCGCAGCTGCATGCCCTGCATGGAGACCAGCTCATCCAGAGCAACCACTACGCTGTGGATTCCATCCGGCCCAAATGCGTGGAGCTGCGACGCATCTGTGACGACTTCAGCAACGAGTCCAAGAAGAAATACGACATCCTGTCCAAATCACTGGAGATCCATACAGGCATGGACAAGgTTAACCACTGGTGTGAGAGTGGAGTGTATCTAATGGCGTCTCAGGCTGTGGATAAGTGCCAGTCTCAGGAGGGTGCGGAGGCGGCACTGCAGGACATCCAGAAGTACATGGATTCAGCCAGGGAGCAGCAGCTCAGTCAGCTAAAAGACCTGTACAACCAGCACGAGATCATCCTGTCTGATCACATAAAGATTAACGTGCAGAGCGCTTTAAAGAGGCTGGATGAAGTTCAAGAGATGTTTGAGAAGAGGCACATCAGCCTAAAGAGGCTTTCAGCTAAGCAGAGCAGACCTGTGCAGCCTGTGGCTCCACGACCTGAATCTTCACCCAAGCGTCCTTCACCCAAAACCCCACGACCTTCCGGCCCAGGTTAGTAAACGGAGCAGCTTTCACTGGAAACAGAATCTGTTTCACAGTGTCTGACCACAAACTGAAACACATGTAACATCTATCTGCTTAGTGCAGTTACAACAACAGACATCTATTCAACTTTTACTACTGCtaccttttcattttttttttgttaaaatggatatt
>XM_022669563.1
AGCGTCTCTCCGTGTGAAGTTCCCTCTGACGCACTGTGGACCAGAACGCCCCTCGCAGTGATGAATGCTTTGCAGGGTGGGAGAGGAAGGGGAAGCCCCCGGAGCTTCTGGCATTGTTGAGGATATTTGTGTAAACCATGGCATTTTGTTCTGCGGCTTCTGAGAAAGCTGTAGAAAGGCCTCGTCGGAGGTGAGCTGCTGCTGGGGAGCGCTGGGGAACATCAGGAGAGGGGAACGAACCCAGGACTGCTGTTGGGACCGGTCGGCCTGGGACGTTCTCCACCATGGGGTCTATAATGTATGAGATTATGCAGCAGGAGATACGGCCGCTGCTGGCTGTGGATATCATCGAGCAGCTTCACAGGCAGTTCGCTCTGCTCTCAGgaggaagaggaaaggATGGCGCCCCCATCATCACCTTCCCCGAGTACTCTGACTTCAGTGAGCTTCCTGAGGAGGATTTTATTAATGTAGTTACATATCTCACCAGCATACCCAGTCTGGACGCGGCCAGTATCGGCTTCATAATTATCATAGACCGCAGGCGGGACAAATGGAGTTCGGTGAAAGCCTCGTTGGCTCGAATAGCAGGGGCGTTCCCTGGCAACCTGCAGCTGGTCCTGGTGCTGAGGCCCTCGCGTTTCTTCCAAAGAGCTATAGCTGACATCGGCATCCGATTACACCGCGATGACTTTAAAATGAAGGTACCGATCGTCatgctgaactctctctcaGATCTGCACGGCTACATCGACAAGGCTCAGCTGACCTGTGAGCTGGGGGGCAGTCTGCAGTACTGTCACAGTCAGTGGATTCACCATCGCACAGCTATTGAAAACTTTGCGGTGACGGTGAAAAGCACAGCGCAGATGCTGCAGAAGTTTGGAACAGATTTGGCAGAAACTGAACTCCCCAATGATGTGCAGTGCACCAAAGATCTGCTGACGTCTCACACAGAGAAACACGATAAACTCAAGGATGAACTAAAGTTAGCATTGAAACAAGGAAGCACTCTGTTGTCTTGCATCAAAGACCTGGCCAATAAAACCGAAAACCACAAGCTGAACCCAGATGAAACGGAAAATCAGACCACTGTTGAAAGGTTGCTGGCTCAGTTGGATGAGACTGAAAATGCTTTTGAACAGTTCTGGTCCAAACATCATCTAAAGTTAGAGCAGTGTTTGCAGCTCAGGCACTTCGAGCAGGACTTTAGAGAGgtaaaAGTGTCGTTGGACAGTCTGATGGAGGATTTGCTGAAGCTCACAGACATCGGGGACTGTGTTAGTCGTGTGGTTCAGCTGCTGAAAGAACTGAAGAGTCTAGAGGACAGTGCTCAGGAGTCTTTGGAGAAGGCGCAGCTGCATGCCCTGCATGGAGACCAGCTCATCCAGAGCAACCACTACGCTGTGGATTCCATCCGGCCCAAATGCGTGGAGCTGCGACGCATCTGTGACGACTTCAGCAACGAGTCCAAGAAGAAATACGACATCCTGTCCAAATCACTGGAGATCCATACAGGCATGGACAAGgTTAACCACTGGTGTGAGAGTGGAGTGTATCTAATGGCGTCTCAGGCTGTGGATAAGTGCCAGTCTCAGGAGGGTGCGGAGGCGGCACTGCAGGACATCCAGAAGTACATGGATTCAGCCAGGGAGCAGCAGCTCAGTCAGCTAAAAGACCTGTACAACCAGCACGAGATCATCCTGTCTGATCACATAAAGATTAACGTGCAGAGCGCTTTAAAGAGGCTGGATGAAGTTCAAGAGATGTTTGAGAAGAGGCACATCAGCCTAAAGAGGCTTTCAGCTAAGCAGAGCAGACCTGTGCAGCCTGTGGCTCCACGACCTGAATCTTCACCCAAGCGTCCTTCACCCAAAACCCCACGACCTTCCGGCCCAGGTTAGTAAACGGAGCAGCTTTCACTGGAAACAGAATCTGTTTCACAGTGTCTGACCACAAACTGAAACACATGTAACATCTATCTGCTTAGTGCAGTTACAACAACAGACATCTATTCAACTTTTACTACTGCtaccttttcattttttttttgttaaaatggatat

Function

NR:

description
guanine nucleotide exchange factor DBS-like isoform X3

GO: NA

KEGG:

id description
K20685 MCF2, ARHGEF14_21_22; guanine nucleotide exchange factor MCF2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669560.1 True 2192 mRNA 0.51 13 8998150 9104845
XM_022669561.1 False 2185 mRNA 0.51 13 8998151 9104845
XM_022669562.1 False 2077 mRNA 0.50 13 9032105 9104845
XM_022669563.1 False 2066 mRNA 0.50 13 9015200 9104844

Neighbor

gene id symbol gene type direction distance location
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding upstream 11564 8942842 ~ 8986586 (+)
LOC103026226 LOC108439428 coding upstream 78406 8828088 ~ 8919744 (+)
LOC103028050 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding upstream 281408 8702442 ~ 8716742 (+)
col6a2 col6a2,LOC107685953,LOC107718216,LOC107551805 coding upstream 297079 8660999 ~ 8701071 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding upstream 361672 8551970 ~ 8636478 (+)
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding downstream 25013 9129858 ~ 9187127 (+)
ect2 ect2,LOC107674529,LOC107718889 coding downstream 89340 9194185 ~ 9255897 (+)
LOC111192504 nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905 coding downstream 321324 9426169 ~ 9713508 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding downstream 841347 9946192 ~ 9953281 (+)
LOC103039038 NA coding downstream 854612 9959457 ~ 9968160 (+)
G41097 NA non-coding upstream 10047 8954803 ~ 8988103 (+)
G41099 ncbp2 non-coding upstream 56079 8937418 ~ 8942071 (+)
G41087 NA non-coding upstream 192947 8804984 ~ 8805203 (+)
LOC111192503 NA non-coding upstream 226889 8770054 ~ 8771261 (+)
G41040 NA non-coding upstream 232270 8763149 ~ 8765880 (+)
G41127 NA non-coding downstream 26264 9131109 ~ 9163752 (+)
G41131 NA non-coding downstream 60164 9165009 ~ 9168734 (+)
G41136 NA non-coding downstream 101476 9206321 ~ 9232010 (+)
G41137 NA non-coding downstream 146672 9251517 ~ 9280561 (+)
G41235 NA non-coding downstream 197780 9302625 ~ 9302915 (+)
LOC103022991 NA other upstream 62664 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 235358 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 473837 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 1171236 7826523 ~ 7826914 (+)
G40756 NA other upstream 2464476 6533365 ~ 6533674 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 890864 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 2466381 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 2564602 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 2649042 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 3229499 12334344 ~ 12340913 (+)

Expression


Co-expression Network