LOC111192504 (nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905)


Basic Information

Item Value
gene id LOC111192504
gene name nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9426169 ~ 9713508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669571.1
atatatatatatatatatatacacacacatacatactggGGAATACGTGGAGCTCTTTGGATATAGACCCGAGGCCGCACCCGGGCGCGTGATTTATCTGCGGACGCCCCGCCGCAAATGGCCGCCGCTCCACCCCTCCGCCCCGCGGCCAGGATGGAGAGCCGCGCTGTCGATAGGATGCAACCTGATGAATAGCGCGCCTCGCGGGGTGAAGATGTTGCCTGGCCGCGTGTAGCAGATCGATGACAGATGGAATACTTGCCGTGCGAGTCGCTCACCCGAGCTGCTGCTGTGGAGCGTTTTTGAGTTTTTGAGGCCCTGTTTGAGTTTTGAGTGTCCCCGCGTTGATCCTGCCTGTCCCTATCTGAGTGGATATTATAACCCGgcacttctgctgctgcttctgctgcctGTTGGTGCCAGTgggaggggtgggggggttTAGTGCACCTCTTGCTGGTGCGGAGGAAGAGGAACCATGCTCCTGCAGCTGCCACGGAGGCTATGCAGTGGCTGGAGAGCCACCCGGCTGCAGCTCCGGCCCCGGCCCAGCCTCAGCGCCGGCCTCGACGTGCCGTGCCTGCTGTGGCTGCTCGGCCTGGCGCTGCAGGCCCTGCCGGCCGCCGCGGAGAAGCTGGACGAGATGGACCCGGTGGTCACCACGGTCTACGGCAAAGTGAGGGGCTTTAAAAAAGAACTCAACAACGAGATCCTAGGACCCGTCATCCAGTTTCTGGGCGTGCCCTACGCGGCGCCCCCTATTGGCGAGAGGCGTTTCCAGCCTCCCGAGCCGCCGGTGTCCTGGCCGGACGTGCGGAACGCCACTCAGTTCGCCCCGGTTTGCCCCCAAACCATTTTAGAGGGCCGATTACCTGACGTCATGCTTCCGGTGTGGTTCACCAACAGCTTGGAGGTGGTGTCGTCCTATGTACAGGACCAGAGCGAGGACTGCCTTTTCTTAAACATCTACGTGCCCACGGAGGATGTCAAAAGAATATCCAAGGAATGTGCCAGGAAACCCGGCAAGAAAATATGTAGAAAAGGAGGTCCTCTTACAAAGAAACAGAGTGATGATTTAGGTGATAATGACGGTGCAGAGGAtgaagACATCCGTGAAAGTGGGAGCCCCAAGCCAGTGATGGTTTTCATCCATGGTGGATCTTATATGGAAGGCACTGGAAATATGTTTGACGGCAGCATCTTGGCCAGTTATGGCAACGTCATCGTCATAACCCTGAACTACCGGCTCGGCGTACTAGGTAAGAGCTTGTTTATTGGTCTGTTATTAAGCTCCGCCCATTATCGATTCCTGGtgatcagctgctgctgctgatgatagtgattatagtgatgatgatgacgttgacgatgatgatgatgatcgaCTCTTCTGATGTCTTTGAtctgatgaacacagtgatagtGATGGTCACTGTAGAGGTTCTGAATTTGATGAGCTGGTGAGGACCTGAATTGGGGTCTGGATTGATGCTTGTATTAGAATatattttgtcgttttttttgtcattttcctcAGGGTGTGGTTTTCTACTATTTTAATTTGGTGCAGATTTCACTTTgtctaagggtgttttttttacacttgtaGTTggtaaatgcaccaaaatgcgcaccaataaaccatgggagcacatcgtctcctctgattggtcagagctgcctTGTAAGAGCAAGAAAATACATATAGAGAGAATATTCTGTGTTCCAATGCATATATCTGTGCACAGAATGGTGAAAATTTGCCGCCAAGCTTTTAAAAACTGTTATCAATGGAGTCACATGGATGTGAGCAGTGTACGCTTCAC
>XM_022669572.1
ACTCGCGCGCCCGTGGGAGCCCGGTGCGCAGGGTGCGCTTTTCAGCACtttggaagagagagagaggatgcaCTGCGGTCTCTAACGGCATATAGGCTACGGCTTGGTTTACGCGCGCGCGGGCGGGCGTTCGTGCATGCGTGTGTGGTTGTGCGcgtgctgctcctgctgctgctgctgctgcctttaACCGGAGGATGTTGCAGTCGGTCCCTCGAGCCGCACGCATGGCTGTGTAACAGACAGCGCTGACGGTGACCGGGAACTTCACGTGCGACTGAGTCTGAACCTCTCCGCTGCTGATGCGCTGGAGGAAAGTGAGAAACTTTACggagaaataaagagatgcGGCGCGCGCGCTAATGATGTTCGGGACTAAGTCGTGTCGGCCACGGCCAGCTCAACGCTCGTGAGAGCTCGTGcactctccctgtctctctgtggTGTAATTGGTGATGAGTGCCGGTCCACTGCAACCACTGTCGGTGTCAGTCTACCACGCGCCTGTTTTTGGGGATTTCTGATTTATGTGCAATTCCAAAGTGGAATTGATCCACACGTGCAGGATTTTCTGCTGGGCAGTGCACGCATGACTTTGGGATAATCCTGTGGGAAAGGATATAGACCCGAGGCCGCACCCGGGCGCGTGATTTATCTGCGGACGCCCCGCCGCAAATGGCCGCCGCTCCACCCCTCCGCCCCGCGGCCAGGATGGAGAGCCGCGCTGTCGATAGGATGCAACCTGATGAATAGCGCGCCTCGCGGGGTGAAGATGTTGCCTGGCCGCGTGTAGCAGATCGATGACAGATGGAATACTTGCCGTGCGAGTCGCTCACCCGAGCTGCTGCTGTGGAGCGTTTTTGAGTTTTTGAGGCCCTGTTTGAGTTTTGAGTGTCCCCGCGTTGATCCTGCCTGTCCCTATCTGAGTGGATATTATAACCCGgcacttctgctgctgcttctgctgcctGTTGGTGCCAGTgggaggggtgggggggttTAGTGCACCTCTTGCTGGTGCGGAGGAAGAGGAACCATGCTCCTGCAGCTGCCACGGAGGCTATGCAGTGGCTGGAGAGCCACCCGGCTGCAGCTCCGGCCCCGGCCCAGCCTCAGCGCCGGCCTCGACGTGCCGTGCCTGCTGTGGCTGCTCGGCCTGGCGCTGCAGGCCCTGCCGGCCGCCGCGGAGAAGCTGGACGAGATGGACCCGGTGGTCACCACGGTCTACGGCAAAGTGAGGGGCTTTAAAAAAGAACTCAACAACGAGATCCTAGGACCCGTCATCCAGTTTCTGGGCGTGCCCTACGCGGCGCCCCCTATTGGCGAGAGGCGTTTCCAGCCTCCCGAGCCGCCGGTGTCCTGGCCGGACGTGCGGAACGCCACTCAGTTCGCCCCGGTTTGCCCCCAAACCATTTTAGAGGGCCGATTACCTGACGTCATGCTTCCGGTGTGGTTCACCAACAGCTTGGAGGTGGTGTCGTCCTATGTACAGGACCAGAGCGAGGACTGCCTTTTCTTAAACATCTACGTGCCCACGGAGGATGTCAAAAGAATATCCAAGGAATGTGCCAGGAAACCCGGCAAGAAAATATGTAGAAAAGGAGGTCCTCTTACAAAGAAACAGAGTGATGATTTAGGTGATAATGACGGTGCAGAGGAtgaagACATCCGTGAAAGTGGGAGCCCCAAGCCAGTGATGGTTTTCATCCATGGTGGATCTTATATGGAAGGCACTGGAAATATGTTTGACGGCAGCATCTTGGCCAGTTATGGCAACGTCATCGTCATAACCCTGAACTACCGGCTCGGCGTACTAGGTAAGAGCTTGTTTATTGGTCTGTTATTAAGCTCCGCCCATTATCGATTCCTGGtgatcagctgctgctgctgatgatagtgattatagtgatgatgatgacgttgacgatgatgatgatgatcgaCTCTTCTGATGTCTTTGAtctgatgaacacagtgatagtGATGGTCACTGTAGAGGTTCTGAATTTGATGAGCTGGTGAGGACCTGAATTGGGGTCTGGATTGATGCTTGTATTAGAATatattttgtcgttttttttgtcattttcctcAGGGTGTGGTTTTCTACTATTTTAATTTGGTGCAGATTTCACTTTgtctaagggtgttttttttacacttgtaGTTggtaaatgcaccaaaatgcgcaccaataaaccatgggagcacatcgtctcctctgattggtcagagctgcctTGTAAGAGCAAGAAAATACATATAGAGAGAATATTCTGTGTTCCAATGCATATATCTGTGCACAGAATGGTGAAAATTTGCCGCCAAGCTTTTAAAAACTGTTATCAATGGAGTCACATGGATGTGAGCAGTGTACGCTTCAC
>XM_022669573.1
atatatatatatatatatatacacacacatacatactggGGAATACGTGGAGCTCTTTGGATATAGACCCGAGGCCGCACCCGGGCGCGTGATTTATCTGCGGACGCCCCGCCGCAAATGGCCGCCGCTCCACCCCTCCGCCCCGCGGCCAGGATGGAGAGCCGCGCTGTCGATAGGATGCAACCTGATGAATAGCGCGCCTCGCGGGGTGAAGATGTTGCCTGGCCGCGTGTAGCAGATCGATGACAGATGGAATACTTGCCGTGCGAGTCGCTCACCCGAGCTGCTGCTGTGGAGCGTTTTTGAGTTTTTGAGGCCCTGTTTGAGTTTTGAGTGTCCCCGCGTTGATCCTGCCTGTCCCTATCTGAGTGGATATTATAACCCGgcacttctgctgctgcttctgctgcctGTTGGTGCCAGTgggaggggtgggggggttTAGTGCACCTCTTGCTGGTGCGGAGGAAGAGGAACCATGCTCCTGCAGCTGCCACGGAGGCTATGCAGTGGCTGGAGAGCCACCCGGCTGCAGCTCCGGCCCCGGCCCAGCCTCAGCGCCGGCCTCGACGTGCCGTGCCTGCTGTGGCTGCTCGGCCTGGCGCTGCAGGCCCTGCCGGCCGCCGCGGAGAAGCTGGACGAGATGGACCCGGTGGTCACCACGGTCTACGGCAAAGTGAGGGGCTTTAAAAAAGAACTCAACAACGAGATCCTAGGACCCGTCATCCAGTTTCTGGGCGTGCCCTACGCGGCGCCCCCTATTGGCGAGAGGCGTTTCCAGCCTCCCGAGCCGCCGGTGTCCTGGCCGGACGTGCGGAACGCCACTCAGTTCGCCCCGGTTTGCCCCCAAACCATTTTAGAGGGCCGATTACCTGACGTCATGCTTCCGGTGTGGTTCACCAACAGCTTGGAGGTGGTGTCGTCCTATGTACAGGACCAGAGCGAGGACTGCCTTTTCTTAAACATCTACGTGCCCACGGAGGATGGTCCTCTTACAAAGAAACAGAGTGATGATTTAGGTGATAATGACGGTGCAGAGGAtgaagACATCCGTGAAAGTGGGAGCCCCAAGCCAGTGATGGTTTTCATCCATGGTGGATCTTATATGGAAGGCACTGGAAATATGTTTGACGGCAGCATCTTGGCCAGTTATGGCAACGTCATCGTCATAACCCTGAACTACCGGCTCGGCGTACTAGGTAAGAGCTTGTTTATTGGTCTGTTATTAAGCTCCGCCCATTATCGATTCCTGGtgatcagctgctgctgctgatgatagtgattatagtgatgatgatgacgttgacgatgatgatgatgatcgaCTCTTCTGATGTCTTTGAtctgatgaacacagtgatagtGATGGTCACTGTAGAGGTTCTGAATTTGATGAGCTGGTGAGGACCTGAATTGGGGTCTGGATTGATGCTTGTATTAGAATatattttgtcgttttttttgtcattttcctcAGGGTGTGGTTTTCTACTATTTTAATTTGGTGCAGATTTCACTTTgtctaagggtgttttttttacacttgtaGTTggtaaatgcaccaaaatgcgcaccaataaaccatgggagcacatcgtctcctctgattggtcagagctgcctTGTAAGAGCAAGAAAATACATATAGAGAGAATATTCTGTGTTCCAATGCATATATCTGTGCACAGAATGGTGAAAATTTGCCGCCAAGCTTTTAAAAACTGTTATCAATGGAGTCACATGGATGTGAGCAGTGTACGCTTCA
>XM_022669574.1
atatatatatatatatatatacacacacatacatactggGGAATACGTGGAGCTCTTTGGATATAGACCCGAGGCCGCACCCGGGCGCGTGATTTATCTGCGGACGCCCCGCCGCAAATGGCCGCCGCTCCACCCCTCCGCCCCGCGGCCAGGATGGAGAGCCGCGCTGTCGATAGGATGCAACCTGATGAATAGCGCGCCTCGCGGGGTGAAGATGTTGCCTGGCCGCGTGTAGCAGATCGATGACAGATGGAATACTTGCCGTGCGAGTCGCTCACCCGAGCTGCTGCTGTGGAGCGTTTTTGAGTTTTTGAGGCCCTGTTTGAGTTTTGAGTGTCCCCGCGTTGATCCTGCCTGTCCCTATCTGAGTGGATATTATAACCCGgcacttctgctgctgcttctgctgcctGTTGGTGCCAGTgggaggggtgggggggttTAGTGCACCTCTTGCTGGTGCGGAGGAAGAGGAACCATGCTCCTGCAGCTGCCACGGAGGCTATGCAGTGGCTGGAGAGCCACCCGGCTGCAGCTCCGGCCCCGGCCCAGCCTCAGCGCCGGCCTCGACGTGCCGTGCCTGCTGTGGCTGCTCGGCCTGGCGCTGCAGGCCCTGCCGGCCGCCGCGGAGAAGCTGGACGAGATGGACCCGGTGGTCACCACGGTCTACGGCAAAGTGAGGGGCTTTAAAAAAGAACTCAACAACGAGATCCTAGGACCCGTCATCCAGTTTCTGGGCGTGCCCTACGCGGCGCCCCCTATTGGCGAGAGGCGTTTCCAGCCTCCCGAGCCGCCGGTGTCCTGGCCGGACGTGCGGAACGCCACTCAGTTCGCCCCGGTTTGCCCCCAAACCATTTTAGAGGGCCGATTACCTGACGTCATGCTTCCGGTGTGGTTCACCAACAGCTTGGAGGTGGTGTCGTCCTATGTACAGGACCAGAGCGAGGACTGCCTTTTCTTAAACATCTACGTGCCCACGGAGGATGACATCCGTGAAAGTGGGAGCCCCAAGCCAGTGATGGTTTTCATCCATGGTGGATCTTATATGGAAGGCACTGGAAATATGTTTGACGGCAGCATCTTGGCCAGTTATGGCAACGTCATCGTCATAACCCTGAACTACCGGCTCGGCGTACTAGGTAAGAGCTTGTTTATTGGTCTGTTATTAAGCTCCGCCCATTATCGATTCCTGGtgatcagctgctgctgctgatgatagtgattatagtgatgatgatgacgttgacgatgatgatgatgatcgaCTCTTCTGATGTCTTTGAtctgatgaacacagtgatagtGATGGTCACTGTAGAGGTTCTGAATTTGATGAGCTGGTGAGGACCTGAATTGGGGTCTGGATTGATGCTTGTATTAGAATatattttgtcgttttttttgtcattttcctcAGGGTGTGGTTTTCTACTATTTTAATTTGGTGCAGATTTCACTTTgtctaagggtgttttttttacacttgtaGTTggtaaatgcaccaaaatgcgcaccaataaaccatgggagcacatcgtctcctctgattggtcagagctgcctTGTAAGAGCAAGAAAATACATATAGAGAGAATATTCTGTGTTCCAATGCATATATCTGTGCACAGAATGGTGAAAATTTGCCGCCAAGCTTTTAAAAACTGTTATCAATGGAGTCACATGGATGTGAGCAGTGTACGCTTCA

Function

symbol description
nlgn1 Predicted to enable neurexin family protein binding activity and signaling receptor activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in excitatory synapse and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; eye; gonad; and swim bladder. Orthologous to human NLGN1 (neuroligin 1).

NR:

description
PREDICTED: neuroligin-1 isoform X1

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669571.1 False 1826 mRNA 0.52 5 9530657 9713508
XM_022669572.1 True 2384 mRNA 0.54 5 9426169 9713508
XM_022669573.1 False 1765 mRNA 0.52 4 9530657 9713507
XM_022669574.1 False 1705 mRNA 0.53 3 9530657 9713507

Neighbor

gene id symbol gene type direction distance location
ect2 ect2,LOC107674529,LOC107718889 coding upstream 170272 9194185 ~ 9255897 (+)
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding upstream 239042 9129858 ~ 9187127 (+)
mcf2l2 LOC108439422,LOC108270998 coding upstream 321324 8998150 ~ 9104845 (+)
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding upstream 439583 8942842 ~ 8986586 (+)
LOC103026226 LOC108439428 coding upstream 506425 8828088 ~ 8919744 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding downstream 232684 9946192 ~ 9953281 (+)
LOC103039038 NA coding downstream 245949 9959457 ~ 9968160 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding downstream 254903 9968411 ~ 9970748 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding downstream 260045 9973553 ~ 9979584 (+)
lgsn NA coding downstream 316149 10029657 ~ 10035243 (+)
G41242 NA non-coding upstream 71375 9354518 ~ 9354794 (+)
G41241 NA non-coding upstream 75502 9350416 ~ 9350667 (+)
G41240 NA non-coding upstream 87951 9337848 ~ 9338218 (+)
G41235 NA non-coding upstream 123254 9302625 ~ 9302915 (+)
G41137 NA non-coding upstream 145608 9251517 ~ 9280561 (+)
G41310 NA non-coding downstream 22795 9736303 ~ 9736830 (+)
G41328 NA non-coding downstream 48958 9762466 ~ 9762867 (+)
G41334 NA non-coding downstream 58032 9771540 ~ 9771771 (+)
G41401 NA non-coding downstream 161552 9875060 ~ 9875277 (+)
G41410 NA non-coding downstream 167547 9881055 ~ 9881290 (+)
LOC103022991 NA other upstream 490683 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 663377 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 901856 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 1599255 7826523 ~ 7826914 (+)
G40756 NA other upstream 2892495 6533365 ~ 6533674 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 282201 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 1857718 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1955939 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 2040379 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2620836 12334344 ~ 12340913 (+)

Expression


Co-expression Network