LOC103039038


Basic Information

Item Value
gene id LOC103039038
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9959457 ~ 9968160 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669576.1
GAGCGGttataaagcacactgtttTAAAGCAGAGTCGGTTCATTAAGTTTATCAAGAGCTTTATATCAGAAAATTACTGCGAGCCGCAGGAGGGAGCTCGCGAGTGAGTCCAATATAAATGGAGTGAATATATGAATGGGGTGATATTCTTTTGATTTCGGCATGTCAAACTAaatattttgctttaaaaagataaaaaaaatctaccagtATAGATGTATTTTACTTCAGTATGCGTGTTTTGGGCAGTAAGTCACACTAGCATTACTACTTCTGATGCTGGAGTTGCAGCCAGAGCACAGAGTTTAAAAGCTACAATCTGTAACCTTTAATATTCTgttttgacaatatttttttgcaataaaaaatgataaaattatacatttatattctgATTTTGGTCTCTCCTCTAAAGAgacaggacttttattttgacagatgtCAGTTGTAACGACATGGGCTACTAAGCAGAAGTAGAGTTCTGCGGTTTGATTGGCTCCTCAGCGGAGTTCAGGGGGTCTgcagttgtttttctttttctttctttcctaaaACGGCAGACTGATTGAGGTTACAGTTAATTCTTTCAGGTCCAGTTGCTAAAGCTTCTGTGATCTGTTCATTTTACATGCCCTTAATAGTGTCAGTATCCAGCGCGCTGTGGACACGTCCTAAGACTGATGGTCTTTAATGGTTTGTTGGGGAATAATGGAAAAAGAGTGCTGTGACTTTAGCCTGATCTACTGTAAATTGGAGCAGCAAAAGATCCAGCTCTGATCAACAGTTCCACACCTCTGTACTCAGACTGCTCTGCTGGAGGAGCTCCATCAGCTCACCTGCTGCAGAACGAATGCCATCCTGATCCAAGTCTTCTTCTGCTGTTAGTGTTGATGTTCCTGCCTGGTTAAAGTTTATCTGAACAAATACACACAAGCGGTGTATGCTGAAAAAGGGGAAAGAACATGGAATCCATAGAAATATCCGATACTCTGCAACCGTCCTCTCCTACACTTCACTCTCAAATGCAGGAAAGTGCAGGCAAGAAGAAAACTCACTACTGTatagactgtggaaagagtttttttgatcagtgtaatCTCTTAATACACCAGCGcactcacactggagagaagccGTTTCACTGTTTAgagtgtgggaggagtttttCCACGCAGAGTAATCTTCTTGTACAcctgcgcattcacactggagagagacCATATGAGTGCTttgactgtgggaagagttttagtcatCAGAGTACTCTCCaacgacaccagcgcattcacacaggtgaGAAGCTGTACTGCCCAGAATGCGAGAAGAGTTTTAATTACGAGAGTCATCTCGTTCGACATCTGCGCATtcatacaggagagaaaccgtgtCATTGcccagactgtgggaagagttttactcatgAGCGATCTCTCCaactacaccagcgcattcataCAAACGAGAAACCttatcagtgctcagagtgtgggaagagttttaatcaaaatatccaTCTCCaactacaccagcgcattcacactggagagaaaccatatcagtgTTCAGAGTGTGAGAAGAAGTTCACTACAGAGAGTAATTTCCTTCGACATCAGcgtgttcacactggagagaaaccgtTCctctgctcagagtgtgggaagagttttattgACCAGAGTCATCTGCttcgacaccagcgcattcacactggagagaagccATATCACTGCTTAGAGTGTGGCAAAAGTTTTAAAGAACAGAGTGTTTTACagcgacaccagcgcattcacactggggagagaccgtatcactgctcagactgtggaaagagttttgcTACAGGGAGTACTCTTCTagcacaccagcgcattcacacaggagagaagccGTATctgtgctcagactgtgggaggagttttactcAGCAGAGTAACCTCCTAGTACACCAGCGTGTTCACACGGGAGAGAAACCTTATTATTGCTCAGACTGCGGGAGGAGTTTTAATTATCAGAATGCTCTCCAACAGCACCAGCTTATTCACACAGGAGATAAACCGTATGAGTGCTTcgagtgtggaaagagttttactcaaaagaGTAATCTCCTCCGACACCAGCTTATTCACACAGGAgggaaaccgtattactgctcagactgtgggaagaacTTCAGGCATTCAGAGACATTTAAGAGACACAAGTGTCTTAACAACAGTCACACGAATAGGCAGTGATGCACCCAAAAACTATTGCAGATCCAAAGTGTTCCAATAGGTGTCTTGTTTATTGAGGTTTTTATATAGACAAACATATTGGCAGTATGCCATCGCCCACTGTAGTATATCAACAGGTTTCTCTActctgtgtctcatttgttttaATGCAAGTGTAGagtcttaagccctatccggacgggattagtttctcaggcggacatctgtgaaaaatatttcacacttctactcagtagTTCagtttccactcgctgttgtgtttacgcggatctctgtggaaatgtgCGCCCAATATCTAATtatggtgtgtggcagtggacaaatagctattttattaaacgtgaggtgaaaAAACttagagatgtgcgtccggatgAGACTGAAATTGCTGGAGGACAACAGAGTTCAGTAAAAAACAGCAGAGGaggtctgagaaaaacacatacatggttgttccggacgggaataaaatcacagaggacccccataaataaaaaaaattacctcaggaccccctgagaaactaatcccatccggatagggctttacaCAATCAGGACATTTTTTCTGAATTTATGCATTTAATGCTTCCGCACTTATCAGGTGTTATTTCAAGTATTTAAGCGGTGTTATGTCAGTAAAATTGGGTTTGGTCACAGATCATACATCTTAATTTACTTTCACTATAAGTGTAATTCTCCCACACCTGAGATGTGGATCTCTTTCTTGAGTCATGATGTTTAATAAATGAGATGATCTTA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669576.1 True 2995 mRNA 0.42 3 9959457 9968160

Neighbor

gene id symbol gene type direction distance location
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding upstream 6176 9946192 ~ 9953281 (+)
LOC111192504 nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905 coding upstream 245949 9426169 ~ 9713508 (+)
ect2 ect2,LOC107674529,LOC107718889 coding upstream 703560 9194185 ~ 9255897 (+)
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding upstream 772330 9129858 ~ 9187127 (+)
mcf2l2 LOC108439422,LOC108270998 coding upstream 854612 8998150 ~ 9104845 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding downstream 251 9968411 ~ 9970748 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding downstream 5393 9973553 ~ 9979584 (+)
lgsn NA coding downstream 61497 10029657 ~ 10035243 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 313348 10281508 ~ 10289616 (+)
trnar-ucg_1 NA coding downstream 324177 10292337 ~ 10292409 (+)
G41410 NA non-coding upstream 78167 9881055 ~ 9881290 (+)
G41401 NA non-coding upstream 84180 9875060 ~ 9875277 (+)
G41334 NA non-coding upstream 187686 9771540 ~ 9771771 (+)
G41328 NA non-coding upstream 196590 9762466 ~ 9762867 (+)
G41310 NA non-coding upstream 222627 9736303 ~ 9736830 (+)
G41436 NA non-coding downstream 21554 9989714 ~ 9993222 (+)
G41465 NA non-coding downstream 115830 10083990 ~ 10088084 (+)
G41477 NA non-coding downstream 160392 10128552 ~ 10130745 (+)
G41507 NA non-coding downstream 250192 10218352 ~ 10226963 (+)
G41511 LOC108438683,LOC108270806 non-coding downstream 260691 10228851 ~ 10231948 (+)
LOC103022991 NA other upstream 1023971 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1196665 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 1435144 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2132543 7826523 ~ 7826914 (+)
G40756 NA other upstream 3425783 6533365 ~ 6533674 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 27549 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 1603066 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1701287 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1785727 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2366184 12334344 ~ 12340913 (+)

Expression


Co-expression Network