lgsn


Basic Information

Item Value
gene id lgsn
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10029657 ~ 10035243 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669578.1
GGCCGCTCTCagcatcagccaatcagaggaggaGTGTGTTTCAGTCACAGGTTGTTAGTTGTGTAAACCACTTTACTGTGGGTGCACTGGGAGGAACTGGGGGTGGGGGGGCAGAGGGAATGTTCCAAATGGTCAGCATTGTACCGGCGGCCTATAAATGATGTGCTTGGCCATAGCTCTTGTTTCAACTTGGAGCTCACAAAATCTGAAACCACCGGCTCAAAGAAACTGGAGACACGATGCAAAAATCAGATGGACCGAAAGAGAAAGTACAGTCTTCAGATTTCTCTACAAAAATATCAAatgAAATGGCATCTACAGATTCAGACCAAGTGGACGGAGGGAACATGAGCCACAGCAGTAAGAAGGGGGTAAAGGTTAGCGGTAAACATGTAGCTTCTTCAGACTGGGACAGAAGGGGGACTCCTGTGCCCATCGTCCAGACAAATTTTTACactccaagtcctgctgaaaaccCCACAGTCATTTCTATTGGCCCACACTGTCAGCCCACTGTCACCAGCGAGCCCCAGAACCAGGATTTCACCAGTAATGATGACTGGGGTGGAGAAGACCTCCGGGGACATCCACCCTTCACAGAACAAGGTGTATCTAGACAGACAGTGGAAGAACTGAAGAATATATTACGTGAGAGCTCCATGCTGAGGGACGACGGCCGCCCGGTCAGTCCCCACAGCCACACGCCTGGACAGAGGGTGGACTGCAGACCAGACGACATACCATCCAAGTCCTTTACAACCTTCAAACCAATTCTTGCAGGGAGCAGAAGAGCCTCGAGACCAAGAGATGGTGCTTCTTCTGGCTGGGATTCTAGTGGGTCATCCAGGACCGACGGTCATACAAGCAGGACAACTGGTTACAGGACACCCTCCAGTGATAGAGCCCACTCCTCCGACACGTGGTCATCACAGACAGATAACAGGGACAGTTCTCATACAGAATCTCACGGATCTCAGAATTTCCTTTACGAGCTTGATCTGATTAAGCAGCAGATTTCTCGAGAGAATGTTGGCTTTGTTCGCTTTGAAGCAACAGATCTTCACGGTGTGTCCAGATCCAAGATGGTCCCCGCTCGCTACTTTCATGAAAAAGCTGTGTATGGTGTACCCATGCCCAGAAGCTACCTGGAACTGACACTGAGCCCAAAAGACAACGAGGTCGATCATCCATCTGCTGCCAATTTCAGCAGTGACGTTCTTCTGGTGCCTGATCTCTCCACCTTCCGGGTCCTTCCCTGGTCTGAACAGACCGCTCGTGTAATTTGCGATCCCTGCACCGTTACAGGCGTTCCACTGCGCACCTCTCCTCGCCTTATCGCTAAACTAATGCTCGGTCAGCTTCAGAGCATGGGGTtctccctccattcctccttcACCTACGAGTGCTGCATATTAGGAGCGCCGGAGCGACTCGGACCCAAGGTTGTGTTCTTTCCCGCTACCACTCTGTTGAGCAATCATGATCTGCCCTTTCTACAGCAGCTGGTGAGAGCCATGTACCACATGGGCGCTGATGTGGACAACTTTGCATCTGCCAGCGGACCGGGACAGATGGAGATCTGCTTCAAGCCGAAGTTTGGAATCGAAGCGGCCGACAGTGCTTTCACATTCCGAACTGGAATCAAAGAGATGGCCAGGAAGCATAACTACATTGTCACATTCCTCACCGACGAGACTCTCAACAACTTGGGACAGCTGTCCCACAGCTTATGGGACGCCAATGGAAGGAAAAGTCTTTTCCACTCGAGCACTGGGGAGCTGTCCGACATTGGCAAGAAATGGCTTGGTGGGCTTCTTCACCACTCGCCAGCATTGAGTTGCCTACTGGCACCGGGGATCGGCTGCCGCAGTCAGCTCTCTAAAGGCAGAGACTCTAAACACCCGTTGTACGCCACATGCGGCTGCAACGACAACAGCTGTTCCTTTAACGTGAAGATCCATGGTGGGCGGGAAATGCACATCGATAACAGGCTTGGCTCAGCTATGGCAAACCCATACATAGTTCTGGCTGCCACAATAGCAGCTGGACTGGATGGCATAAAGCGTAACCTCAGCATAGAACAGGGTCTCAACCGAGCTCCAAACCAACAGAAACAGGTTGTGATCCCAGTTAAACTGGAGGATGCTTTAGAAGCCCTTGCAGAAGATGCTGTGATCCGTGGGTCACTTGGTGAGCCTTTTATTCAGTACTTCATCGCCATGAAGCGCCTTGAGATTGAGACACAGGAGCTTGATACAGACAGAAACAAAGGCTTGGAATATTTCATctagataaaaatataatctgATGAATGTTTAGATTCACAGACAGATCTTTTCACGTAGAGAAGAGCAAGAATAACAGgcactcgtttttttttatcccaacAATAATATTTGAAGATACATTAAGTAACAAGCTCTgtttaagagaaataaaagcttGTGATGATTTAAATGGAAAA
>XM_022669579.1
AAACCACTTTACTGTGGGTGCACTGGGAGGAACTGGGGGTGGGGGGGCAGAGGGAATGTTCCAAATGGTCAGCATTGTACCGGCGGCCTATAAATGATGTGCTTGGCCATAGCTCTTGTTTCAACTTGGAGCTCACAAAATCTGAAACCACCGGCTCAAAGAAACTGGAGACACGATGCAAAAATCAGATGGACCGAAAGAGAAAgAAATGGCATCTACAGATTCAGACCAAGTGGACGGAGGGAACATGAGCCACAGCAGTAAGAAGGGGGTAAAGGTTAGCGGTAAACATGTAGCTTCTTCAGACTGGGACAGAAGGGGGACTCCTGTGCCCATCGTCCAGACAAATTTTTACactccaagtcctgctgaaaaccCCACAGTCATTTCTATTGGCCCACACTGTCAGCCCACTGTCACCAGCGAGCCCCAGAACCAGGATTTCACCAGTAATGATGACTGGGGTGGAGAAGACCTCCGGGGACATCCACCCTTCACAGAACAAGGTGTATCTAGACAGACAGTGGAAGAACTGAAGAATATATTACGTGAGAGCTCCATGCTGAGGGACGACGGCCGCCCGGTCAGTCCCCACAGCCACACGCCTGGACAGAGGGTGGACTGCAGACCAGACGACATACCATCCAAGTCCTTTACAACCTTCAAACCAATTCTTGCAGGGAGCAGAAGAGCCTCGAGACCAAGAGATGGTGCTTCTTCTGGCTGGGATTCTAGTGGGTCATCCAGGACCGACGGTCATACAAGCAGGACAACTGGTTACAGGACACCCTCCAGTGATAGAGCCCACTCCTCCGACACGTGGTCATCACAGACAGATAACAGGGACAGTTCTCATACAGAATCTCACGGATCTCAGAATTTCCTTTACGAGCTTGATCTGATTAAGCAGCAGATTTCTCGAGAGAATGTTGGCTTTGTTCGCTTTGAAGCAACAGATCTTCACGGTGTGTCCAGATCCAAGATGGTCCCCGCTCGCTACTTTCATGAAAAAGCTGTGTATGGTGTACCCATGCCCAGAAGCTACCTGGAACTGACACTGAGCCCAAAAGACAACGAGGTCGATCATCCATCTGCTGCCAATTTCAGCAGTGACGTTCTTCTGGTGCCTGATCTCTCCACCTTCCGGGTCCTTCCCTGGTCTGAACAGACCGCTCGTGTAATTTGCGATCCCTGCACCGTTACAGGCGTTCCACTGCGCACCTCTCCTCGCCTTATCGCTAAACTAATGCTCGGTCAGCTTCAGAGCATGGGGTtctccctccattcctccttcACCTACGAGTGCTGCATATTAGGAGCGCCGGAGCGACTCGGACCCAAGGTTGTGTTCTTTCCCGCTACCACTCTGTTGAGCAATCATGATCTGCCCTTTCTACAGCAGCTGGTGAGAGCCATGTACCACATGGGCGCTGATGTGGACAACTTTGCATCTGCCAGCGGACCGGGACAGATGGAGATCTGCTTCAAGCCGAAGTTTGGAATCGAAGCGGCCGACAGTGCTTTCACATTCCGAACTGGAATCAAAGAGATGGCCAGGAAGCATAACTACATTGTCACATTCCTCACCGACGAGACTCTCAACAACTTGGGACAGCTGTCCCACAGCTTATGGGACGCCAATGGAAGGAAAAGTCTTTTCCACTCGAGCACTGGGGAGCTGTCCGACATTGGCAAGAAATGGCTTGGTGGGCTTCTTCACCACTCGCCAGCATTGAGTTGCCTACTGGCACCGGGGATCGGCTGCCGCAGTCAGCTCTCTAAAGGCAGAGACTCTAAACACCCGTTGTACGCCACATGCGGCTGCAACGACAACAGCTGTTCCTTTAACGTGAAGATCCATGGTGGGCGGGAAATGCACATCGATAACAGGCTTGGCTCAGCTATGGCAAACCCATACATAGTTCTGGCTGCCACAATAGCAGCTGGACTGGATGGCATAAAGCGTAACCTCAGCATAGAACAGGGTCTCAACCGAGCTCCAAACCAACAGAAACAGGTTGTGATCCCAGTTAAACTGGAGGATGCTTTAGAAGCCCTTGCAGAAGATGCTGTGATCCGTGGGTCACTTGGTGAGCCTTTTATTCAGTACTTCATCGCCATGAAGCGCCTTGAGATTGAGACACAGGAGCTTGATACAGACAGAAACAAAGGCTTGGAATATTTCATctagataaaaatataatctgATGAATGTTTAGATTCACAGACAGATCTTTTCACGTAGAGAAGAGCAAGAATAACAGgcactcgtttttttttatcccaacAATAATATTTGAAGATACATTAAGTAACAAGCTCTgtttaagagaaataaaagcttGTGATGATTTAAATGGAAAA
>XM_022669580.1
gggacGGGTCACTCAGAACCGGGTCAGCCCGCCGCTGCTGCTGTTCTCTCCCTCCCCGCGCGGTGATGCCATATCAGACCAGgAAATGGCATCTACAGATTCAGACCAAGTGGACGGAGGGAACATGAGCCACAGCAGTAAGAAGGGGGTAAAGGTTAGCGGTAAACATGTAGCTTCTTCAGACTGGGACAGAAGGGGGACTCCTGTGCCCATCGTCCAGACAAATTTTTACactccaagtcctgctgaaaaccCCACAGTCATTTCTATTGGCCCACACTGTCAGCCCACTGTCACCAGCGAGCCCCAGAACCAGGATTTCACCAGTAATGATGACTGGGGTGGAGAAGACCTCCGGGGACATCCACCCTTCACAGAACAAGGTGTATCTAGACAGACAGTGGAAGAACTGAAGAATATATTACGTGAGAGCTCCATGCTGAGGGACGACGGCCGCCCGGTCAGTCCCCACAGCCACACGCCTGGACAGAGGGTGGACTGCAGACCAGACGACATACCATCCAAGTCCTTTACAACCTTCAAACCAATTCTTGCAGGGAGCAGAAGAGCCTCGAGACCAAGAGATGGTGCTTCTTCTGGCTGGGATTCTAGTGGGTCATCCAGGACCGACGGTCATACAAGCAGGACAACTGGTTACAGGACACCCTCCAGTGATAGAGCCCACTCCTCCGACACGTGGTCATCACAGACAGATAACAGGGACAGTTCTCATACAGAATCTCACGGATCTCAGAATTTCCTTTACGAGCTTGATCTGATTAAGCAGCAGATTTCTCGAGAGAATGTTGGCTTTGTTCGCTTTGAAGCAACAGATCTTCACGGTGTGTCCAGATCCAAGATGGTCCCCGCTCGCTACTTTCATGAAAAAGCTGTGTATGGTGTACCCATGCCCAGAAGCTACCTGGAACTGACACTGAGCCCAAAAGACAACGAGGTCGATCATCCATCTGCTGCCAATTTCAGCAGTGACGTTCTTCTGGTGCCTGATCTCTCCACCTTCCGGGTCCTTCCCTGGTCTGAACAGACCGCTCGTGTAATTTGCGATCCCTGCACCGTTACAGGCGTTCCACTGCGCACCTCTCCTCGCCTTATCGCTAAACTAATGCTCGGTCAGCTTCAGAGCATGGGGTtctccctccattcctccttcACCTACGAGTGCTGCATATTAGGAGCGCCGGAGCGACTCGGACCCAAGGTTGTGTTCTTTCCCGCTACCACTCTGTTGAGCAATCATGATCTGCCCTTTCTACAGCAGCTGGTGAGAGCCATGTACCACATGGGCGCTGATGTGGACAACTTTGCATCTGCCAGCGGACCGGGACAGATGGAGATCTGCTTCAAGCCGAAGTTTGGAATCGAAGCGGCCGACAGTGCTTTCACATTCCGAACTGGAATCAAAGAGATGGCCAGGAAGCATAACTACATTGTCACATTCCTCACCGACGAGACTCTCAACAACTTGGGACAGCTGTCCCACAGCTTATGGGACGCCAATGGAAGGAAAAGTCTTTTCCACTCGAGCACTGGGGAGCTGTCCGACATTGGCAAGAAATGGCTTGGTGGGCTTCTTCACCACTCGCCAGCATTGAGTTGCCTACTGGCACCGGGGATCGGCTGCCGCAGTCAGCTCTCTAAAGGCAGAGACTCTAAACACCCGTTGTACGCCACATGCGGCTGCAACGACAACAGCTGTTCCTTTAACGTGAAGATCCATGGTGGGCGGGAAATGCACATCGATAACAGGCTTGGCTCAGCTATGGCAAACCCATACATAGTTCTGGCTGCCACAATAGCAGCTGGACTGGATGGCATAAAGCGTAACCTCAGCATAGAACAGGGTCTCAACCGAGCTCCAAACCAACAGAAACAGGTTGTGATCCCAGTTAAACTGGAGGATGCTTTAGAAGCCCTTGCAGAAGATGCTGTGATCCGTGGGTCACTTGGTGAGCCTTTTATTCAGTACTTCATCGCCATGAAGCGCCTTGAGATTGAGACACAGGAGCTTGATACAGACAGAAACAAAGGCTTGGAATATTTCATctagataaaaatataatctgATGAATGTTTAGATTCACAGACAGATCTTTTCACGTAGAGAAGAGCAAGAATAACAGgcactcgtttttttttatcccaacAATAATATTTGAAGATACATTAAGTAACAAGCTCTgtttaagagaaataaaagcttGTGATGATTTAAATGGAAAA

Function

NR:

description
lengsin

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0006542 glutamine biosynthetic process biological_process
GO:0005884 actin filament cellular_component
GO:0004356 glutamate-ammonia ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669578.1 True 2464 mRNA 0.50 4 10031546 10035243
XM_022669579.1 False 2364 mRNA 0.50 4 10031610 10035243
XM_022669580.1 False 2241 mRNA 0.51 4 10029657 10035243

Neighbor

gene id symbol gene type direction distance location
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 50073 9973553 ~ 9979584 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 58909 9968411 ~ 9970748 (+)
LOC103039038 NA coding upstream 61497 9959457 ~ 9968160 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding upstream 76376 9946192 ~ 9953281 (+)
LOC111192504 nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905 coding upstream 316149 9426169 ~ 9713508 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 246265 10281508 ~ 10289616 (+)
trnar-ucg_1 NA coding downstream 257094 10292337 ~ 10292409 (+)
LOC103033216 LOC108428499 coding downstream 683497 10718740 ~ 10730389 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 698051 10733294 ~ 10743346 (+)
trnam-cau_21 NA coding downstream 719966 10755209 ~ 10755281 (+)
G41436 NA non-coding upstream 36435 9989714 ~ 9993222 (+)
G41410 NA non-coding upstream 148367 9881055 ~ 9881290 (+)
G41401 NA non-coding upstream 154380 9875060 ~ 9875277 (+)
G41334 NA non-coding upstream 257886 9771540 ~ 9771771 (+)
G41328 NA non-coding upstream 266790 9762466 ~ 9762867 (+)
G41465 NA non-coding downstream 48747 10083990 ~ 10088084 (+)
G41477 NA non-coding downstream 93309 10128552 ~ 10130745 (+)
G41507 NA non-coding downstream 183109 10218352 ~ 10226963 (+)
G41511 LOC108438683,LOC108270806 non-coding downstream 193608 10228851 ~ 10231948 (+)
LOC107197699 NA non-coding downstream 268495 10303738 ~ 10329108 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 6693 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 1094171 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1266865 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 1505344 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2202743 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 1535983 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1634204 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1718644 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2299101 12334344 ~ 12340913 (+)
G42068 NA other downstream 2597573 12632816 ~ 12633429 (+)

Expression


Co-expression Network