LOC103033216 (LOC108428499)


Basic Information

Item Value
gene id LOC103033216
gene name LOC108428499
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10718740 ~ 10730389 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669593.1
AAGGGGCGGAGCGAGGCGCCGGAGTGCGGAGAGGAGCAACATGGACCTGAACAGAAACAGAAGCTGAGCCTCAGCGGCTGAAGCGCTTGTTTTAGGGTCTCTGAGACTCAGACAGACCGCGGTAAAGCCTGGCAGCGCTGTGTAACATGCCCCGCTGCCGGGTGACGGGCTGGTTTTAAGGGTAGTTTTAGTGTAGCGGTGCTGATAGAGGAGCAGCGGCGGCTCCTCCCGGTTTGTTTACCAGTAGCTGGGTTCGGTTAGACTGGGAGTGTTTATTGGTCTGAAGCTCGGAGATGGAGTATCTCCTGCAGGTTAAAGTGGGAGCGCTGGTCGGGCTGCTGCTCCTCACTCTGCTGTTTGGGTTTATTCCTGCTCGGATGAGATGGTTCAGAGAAACCAGTGGAACAGAAACCCATCAGAAAGTGCTGAGTTTCATCAGCTGTTTTGCGGGTGGTGTGTTCCTGGCTGCCTGTCTCCTGGACATCATCCCAGACTATCTGTCTGACATAAGCGATCAGCTGCAGGGTCTGGATGGCGGATTCCCTGTGGCTGAGTTCATCATGGCATGTGGCTTCTTCACTGTCCTGATTCTGGAGAGGATAGTGCTCAGCTGCACTGGCTCCAGGAGTGAGGAAACGTCTCCGCTGCTGGGGCACGGGCACGGGCATGCACACGGGCATCGCTCTGTGAACGACATGGAGGGCAGTGCCCATCACGTCCACGTGGACCTGCAGGCCCACTCGTCTTTCCGCTCCTTTATGCTgttcctgtctctctccctgCACTCAGTGTTCGAAGGATTAGCCATTGGTTTACAAACCACAGATgccaagGTATTGGAGATTTGCATCGCCATCCTGGTCCACAAGAGCATCATCGTCTTCAGTCTGTCGGTGAAGCTGGTCCAGAGTGCGGTCCGGCCCGCCTGGGTGGGCATCTACATCACTGTCTTTGCATTAATGTCACCGATTGGCATCGGGGTGGGCATCGGAGTCAGTGAAGCTAAGCTCCATTCAGGGGCTTTAGTGCAGGGCATTCTGGAAGGCATGGCAGCCGGTACGTTCATCTACATCACCTTCCTGGAGATCCTGCCTCATGAGCTCAACTCTCCGGAGAGGCAGCTCCTCAAGGTCCTCTTCATTTTAGTGGGATTCTCAGTGATGGCTGGACTGTGTTTCCTGGGCTGAGAGAAACTATTGGCCCACAGATCCACCATGTTCACCATAAAGCTCTTCTGAGGGAACTACACTTGTGTACTGAATACATCTGCCTGGGATCTGGAGGAACAtcagaaacaagaaacaaggagCATTTCTATCAAACTGAcagaagagagacagaagtTTAATTGCGTTAAATGGCATTTTATTATTGCCATAGAGTGCCAGAAGACATTCTGTTTACCTTAAAAtataagtttttcttttttttctttttatccaaaaaaatattttaatcctAACTGACACATTTGATTGACACATTTCTGACACAAAATCTTAAGTTAAGTCAACTCTACATCGACAAACACTGATATCCAGGCAAGTAAAGTCATCTTAAATATATTCAGTATAGCTACGTATATAACATTTTGAGATTGTTGTGGGATTTATTTAGGTCATTTTATCCATAACAAATTTCATGCAAAACATTCCACCAGattaaatagaattaaaaaaaggaaatataaagACTTAAAGAGCCCATATCCTACATGtctctttttattcttattttatatccTTTCTTGATGTTTGATTATATTCTGCTGTGTCTCTCTATCCATTGGAATttgcctgtttttgtttttggcatTCTATCAGCAGCTGGAACCCGAGAGAGGACAATTGGCCTCTGCCCATATCTAGTGTACTCTGGAGCATTGCAAGTGATTGGAGGAGTCATAGTGGCTCAGCTAAATTGAGGAAAAAttgggtaaaaataaaaaaatatatacatcagACTTTGtactacaaaaatacaaaacaggaTTTTTACAGCATATTTTCCATATGTGAAGTCCTAATCGatgtggacagtgtgccaacTACACAGTGCAGACTTGGGGCGGGGGGAAAGCAAATATGCGTAGTATGTTTATCACAGGGGCCCTCTAgaaataaaacatctaaaattattttattaataatcccACAACATTCTCAAATTCCAGAATAAGAAATATTAGGTATACCAACTATATTTAAGATGAGATTATTTGTCATttctatatgtatttttaatatatttttgctttgaTTACCGTTTTGAGACACTGGGTTTCCAGAGTGGATAGTACATTTTGTACACGCAAGATTTTTTATACAGAGCATTTTGAAAAACGTCCATCTTTAAAACTTTCAAACATGTCTGTTTAAGGAACCATGAATGCTTCTGCTAAtcctttttttaagtgttgttCAAGGGTTTTTTATGAATACTGTGGTCTTTTAAAGACACAAAGAACCATTTCAGTCCTCAATGTTCTTGAAAAACAAGGAAAACCTCTGAAGGAACTTTGCTAATCGGGACCTTTAACAAGGGGATTCTGTACAGCATTAAAAAGCACTGTTGTTTTGAATCTGAGATCCCTGTTTGTAGTACTATGTGGAATCCTTTTAGCTGAGACAGTATGGcatcacttttttaaatatagtctAATCCGTGTgtctttaaaattgtattgtaCGGCAATCCTAAATTCATTGttagcattttttaatttagttttattatgttGAACTGATGATCTATCAAAGGCTCTAATTTTGAACATGA

Function

NR:

description
PREDICTED: zinc transporter ZIP1-like

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
K14709 SLC39A1_2_3, ZIP1_2_3; solute carrier family 39 (zinc transporter), member 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669593.1 True 2778 mRNA 0.43 4 10718740 10730389

Neighbor

gene id symbol gene type direction distance location
trnar-ucg_1 NA coding upstream 426331 10292337 ~ 10292409 (+)
psmd14 psmd14,psde,LOC107563735 coding upstream 429124 10281508 ~ 10289616 (+)
lgsn NA coding upstream 683497 10029657 ~ 10035243 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 739156 9973553 ~ 9979584 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 747992 9968411 ~ 9970748 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 2905 10733294 ~ 10743346 (+)
trnam-cau_21 NA coding downstream 24820 10755209 ~ 10755281 (+)
LOC103034920 NA coding downstream 25980 10756369 ~ 10861101 (+)
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding downstream 139233 10869622 ~ 10934882 (+)
atp5d atp5d coding downstream 420246 11150635 ~ 11157835 (+)
G41604 LOC108270701,LOC108428498,LOC107737005,LOC107685214 non-coding upstream 132791 10535765 ~ 10585949 (+)
G41597 NA non-coding upstream 226839 10462890 ~ 10491901 (+)
LOC107197699 NA non-coding upstream 389632 10303738 ~ 10329108 (+)
G41511 LOC108438683,LOC108270806 non-coding upstream 486792 10228851 ~ 10231948 (+)
G41507 NA non-coding upstream 491777 10218352 ~ 10226963 (+)
G41682 NA non-coding downstream 134324 10864713 ~ 10864960 (+)
G41684 NA non-coding downstream 136595 10866984 ~ 10867501 (+)
G41689 NA non-coding downstream 137743 10868132 ~ 10868418 (+)
G41686 tpm4a,LOC103036175,LOC107665514,LOC107561904 non-coding downstream 254819 10985208 ~ 11016077 (+)
G41731 NA non-coding downstream 304385 11034774 ~ 11035067 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 695776 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 1783254 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1955948 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 2194427 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2891826 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 840837 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 939058 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1023498 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 1603955 12334344 ~ 12340913 (+)
G42068 NA other downstream 1902427 12632816 ~ 12633429 (+)

Expression


Co-expression Network