G47184


Basic Information

Item Value
gene id G47184
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11287486 ~ 11290495 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53676
TGAAAATGTAATTTTATAATAAATTATATATTTTAATATTTATTTATAATTTTAAATGTATATTAAATATTGCATGTAAACTTTGTATAAAATTAATTATAAAAGTAAATATAAAATTATACACACATTCATATTTAAAAACAAAAATACATATATACATTTTTTGTTTTGGGGCCAGTAAAAACATTAGCAGGGAAAGTAGAAATCAAAACTACTGGCCTGACCTGGACAGCAGAAAAAAAACTTACTGTTGAGCTCTGATTTATCCTTCATGTAGAAGGCAATTTCAGAATATGAAATATTGGATATTTTAATATTTTTTTAAAAATATTTCAAAATCGAATTGATTCAGTACTGCTTAAAAATATTAAGCCTAGCAGCATACTAATGCCAAACTATTGAAATCAATTGCAAATCGAGTCTCCTATTCAGTCTGTGCATGCTATTCGAGTTTGTGCCTACATAGATAACTCCAAATCATTTAAAGGGTTAGTGCACCCAAAAACATAGGTAACCAGACAGTTGATGGACCCCATTGACTTCCATAGTATTGAGGGAAAAAATACTATGGAAGTCAATAGTGACCATCAACTGTTTGGTTACACACATTCTTCAAAAAATTAGTGTTCAGCAGAAGAAAGAAACTCATGCAGGTTTGGAACAACTTAAGGGTGAGTAAATGATGACAGAGAACTTTCATTTTTGGGTGAACTATCCATTTAAGTTTCAGCTAGGATGCTTCCTATATAGGCCACAAGACAGCAAGGCAGCTCACTAGGTTTTGGGAAGAGCCTTTGACAACACGCCAGCATTGTGAGGAGTCTCAGAATGAAAAATCCTTTCAGATTTATTTAGATGGAGCAAGAAAATGAGGAGACCCTTTATCCAGTTATGAGAGGCGAAGCAGGAACTTGACATTGCAATCAGAGACAAGCAGCCATTGAAACTAATGAAAAGTTTAGATCTTCCGCGAGGGATCTGATTGATGCATTTAGAAAAAGAAGAGAAAAAAAAGTTCAGACAGGGAAGAGGTGGCGACACAAAGCAACAATGTGTCAGTCATGTTATATAAGAGGGAGCGAGTGGGAGAGGAAATTGAGAAATGGTGTTATTGTAATGTGTGTGTGAGTGTCTGGCTTTGAATGCTGAGGCAGTGTGTGAAACAGTTCCACAGAGCCGACGTGTGTGTGTGTGTGTTCTACTTGAATCTTTGAAATATTGACTAGTGCAAGCACAGGACTGCTCATTCCCACCTGCCCACCTTCTCTAATATGACAGCCCACCTAGATCACATGCGCCACCATTTTCACTCCTCTACAAACCCTCACACAGTGTGTTGCTTGTTAGACTCAGACATTTGAACAGTGTATATATGGTATATCTATATATTTTAAGTAAATTATTTGTAAGAAATGATAATATGATCTTGAAATCTTTTCCTTTGTGTACCAAAGGTGCTCAGAGGAAAGACATGCAGGCAAGTCTGAATGACTACCAATTTAAAAAAGTGTTGCATCTAACAAACCTAATGGATTTGCTGCTCTGATTTTATCTCTTGTTTGTTTTGCTTATTGCATATTTGTTTTATCCTCATCTCTTTTACTTCCCACAGTTGGGTATATGTGCACTTGAATAAGTCATCTGAATGCAGTAAAGCATTTATCCAGTGAAATCTTCTTCCTTTAAAAAGTTCTGCACACACCTGTCTGACAGCATTAGGAATGACATGTACTCTTTTGTCAAAGTATTGCTTCAGTGCTCATCCCACGGAGAACGTTCACGGCAAAGTCCTCAATGCACAAAGGTATCAGAATGAAAGGTGGGGGGGGGGGTCTTTGCACCAGCATCTCATCTCACCGATGCAGCTCTTCATATGGAGATCAGCCCTGTGTAGTTTATGTGTGGAGCTGCTGTGTTTTTCATAGGTGGATGGGAACACAGATCAAAGAACAGAGCATGTCTGACCGTACTGACCTTCAGATACGTATAAACATACTCACAAGCAGTGTTGGGGAAAGTTACTTTTAAAAGTAATGCATTACAATATTGCGTTAAAAAAGTAACTAATTGTGCTGCTTAGTTACTTTTTATTCAAAGTACTGCATTACGTTACTTTTGCGTTACTTTTTCCTCAACTGGGATAGGCTGTATGTTTGACAAAAAACAAACAATTTTCTATTTTTGGCAAATATAAAGGCCCTTTCGCACCAAAAGTGAAATGAATAAGCCTCAGGCTGAAGGAAATGCAAATTCGCACCTGTACAGTAGAGGGTGCAGCTCAGGCAAACAAGCCTTTCAGCTGTGCTGCCACAGCAGAAGTAAATGAGTAAATGTCTACTAAAACTAGTCTAGAATAAGCATTATGTTCACACAGCGCACACATCTCTGCACTCCCGATTTTTCTCAACATGGGGACAGGAGAGCTGTCAGTCAATAAATGGGAAAACAAAGTAACTTGCGTTTCTTATTTGAAAAAGTAACTCAGATATTTTGTTGTAAATTTAAAAGTATTGTTACTTTACTAGTCACTTGAAAAAAGTAATCTGATTACGCAACTCGCGATACTTGTAATGCGTTACTCCCAACACTGCTTCCCAAACAGATTTGCAGACTCAAGATCGCATGTTCAGGATTCAGCCTCAACGTCTTAAAAAATTAAATGATGCTTATTTGTTGCATTTGTTGCAAACTTCAATCAAACTAGCTTTTTTATTTTTTGTTCATTTCAATGAGGTTCACAGTTTTTGTAACCTTGTTAAAGGACTAGTTCACTTTAAAATGAAAATTACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU53676 True 2791 lncRNA 0.37 2 11287486 11290495

Neighbor

gene id symbol gene type direction distance location
CI01000006_11178091_11284993 DFNB31, DFNB31A, WHRN coding upstream 2455 11177136 ~ 11285031 (+)
CI01000006_11143743_11157316 MAN1B1A coding upstream 128899 11143743 ~ 11158587 (+)
CI01000006_11122190_11137711 NA coding upstream 149730 11122190 ~ 11137756 (+)
CI01000006_11069210_11101466 NA coding upstream 185997 11068275 ~ 11101489 (+)
CI01000006_10921053_11064211 NA coding upstream 223275 10921053 ~ 11064211 (+)
CI01000006_11298514_11313005 NA coding downstream 7877 11298372 ~ 11313385 (+)
CI01000006_11362605_11384441 NA coding downstream 72110 11362605 ~ 11385087 (+)
CI01000006_11395393_11412606 NA coding downstream 104628 11395123 ~ 11412606 (+)
CI01000006_11429439_11432136 NA coding downstream 138279 11428774 ~ 11432797 (+)
CI01000006_11436920_11440304 NA coding downstream 146425 11436920 ~ 11440304 (+)
G47194 NA non-coding upstream 102316 11104661 ~ 11185170 (+)
G47252 NA non-coding upstream 461553 10825660 ~ 10825933 (+)
G47175 NA non-coding upstream 482433 10801586 ~ 10805053 (+)
G47213 NA non-coding upstream 614894 10664966 ~ 10672592 (+)
G47220 NA non-coding upstream 671468 10615325 ~ 10616018 (+)
G47164 NA non-coding downstream 24028 11314523 ~ 11321670 (+)
G47163 NA non-coding downstream 96708 11387203 ~ 11392950 (+)
G47298 NA non-coding downstream 124261 11414756 ~ 11415179 (+)
G47299 NA non-coding downstream 124943 11415438 ~ 11415704 (+)
G47145 NA other upstream 775680 10485358 ~ 10511806 (+)
G46652 NA other upstream 1128235 10156579 ~ 10159251 (+)
G45416 NA other upstream 2452789 8818814 ~ 8834697 (+)
G45355 NA other upstream 3075098 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 3087341 8197881 ~ 8200145 (+)
G47159 NA other downstream 125734 11416229 ~ 11521703 (+)
G47318 NA other downstream 333772 11624267 ~ 11638252 (+)
G48094 NA other downstream 987125 12277620 ~ 12279541 (+)
G48081 NA other downstream 1086511 12377006 ~ 12384827 (+)

Expression


Co-expression Network