med16 (med16,LOC107723868,LOC107753817,LOC107656090)



Basic Information


Item Value
gene id med16
gene name med16,LOC107723868,LOC107753817,LOC107656090
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15805602 ~ 15826504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022669688.1
CATAGACGGTTatatttagttagctagttagtctgttagcttagttagctaacaGTTAGTGTTTCTGTTTATGGTTAGGGTCGTTACACTCCTGGCCGGTAACGGCGCTCTGACAGGTCAGTGCTGGGCGGAGCGCAGCGCTGCAGAGGAAGACTCATACACACAGCAACAGCGCTGTAGTTCACTGTATAATCTCCATACACAGaaactttattttagtttaactgTGTTGTTTCAGAACCGTGTGGATTGtacatattttttctaaatacgtcgcttttttccccctcatttGTATCAAATTTGGTGAGATTTTGCGCTTTGTTATGACGAACTGGTTAGCTAAATAAGCTAACAAGCTAGcgttagctggctagctaacaagctagcattagctgctagctaACGCCGGGCAGTAGAGTCTATTGAATGGCTCTCTGTTCACTTGAGCGTTTGTATGAAACCCGGAGACATTGGAGGAGTATATCTATCTTAGTTAAATcgttaatgtattaataatggaggttgtgtatgtgtgcgagTGGGAGAAGAGACCCAAAAACAACCACTGCCCCTCCATCCCGCTGGTGTGTGCCTGGTCCTGCAGAAACCTCATCGCCTTCACAACAGACCTGAAAAATGAAGAGGACGATAAAGAACTCAGTCACATGATTCATATCATTGACACTGAACACCCCTGGGATGTCTACTCCATCAACTCGGGTCATAGGGAAGTTATTTCGTGCTTGGAGTGGGACCAGTCAGGATCCAGACTGCTCTCTGCTGATGGGGACGGAGAGATCAAGTGTTGGGCAATGAAGGAACACCTTGTGAACAGCTGGGAAAGTATACAGAGCAGCTCTGTTGATGGAGACCCTATTGTAGCTCTCTCATGGTTGCACAATGGGGTCAAACTTGCACTGCATGTGGAGAAGTCTGGATCCACCAACTTTGGTGAGAAGTTCTCCCGGGTGAAGTTCTCTCCGTCACTCACTCTGTTCGGCGGTAAGCCTATGGAGGGCTGGCTGGCTGTGACCGTGAGTGGCCTGGTGACCGTGTCCCTTCTGAAGCCCAACGGCGCTTTGCTGTCAGCCAGCGAAAGCCTGTGCCGGCTGCGTGGACGCGTGGCTCTGGCTGACATTGCCTTCACCGGCGGGGGGAACATTGTGGTGGCAGCGACGGACGGCAGCAGCTCATCACCAGTTCAGttttataaagtgtgtgtgagtgtggtgaaCGAGAAGTGCCGCATCGATACAGAACTGCTGCCCTCGCTCTTTATGCGCTGCACCACTGACCCGGTGCGACGGGACAAGTATCCAGCTGTCACACACCTCAAATTCCTCACACGGGAGAACTCTGAGCAGGTACTGCTGTGTGCATCCAGTCAGATGGGGAGCATTGTAGAGTGCTGGTCCTTACGAAAGGAGGGGCTTCCAGTCAATAACATATTTCAGCATCGCTCACCTGTTGTGGGTGAGAAGCAGCCGATGATTCTGAAGTGGCGAATCCTTTCGGCCACAAATGATTTGGACCGTGTCTCTGCAGTGGCACTACCTAAACTGCccatctccatctccaacaCTGATCTTAAAGTCGCCTCTGACACAAAGTTTTGCCCAGGTCTTGGCCTGGCTTTGTCATTCCATGATGGCAGCATTCAAATACTGCATCGTCTGTCCCTTCACACCATGGGTATGTTCTATGGGTCCTCTGGTTCCTCCCAGCGAGTGGGAGACGAGCCAGCCATCAAACGGCAGAGAGCTGGAGGTCCTGCCGTCCACTTTAAAGCCCTGCAGTTTTCCTGGACATCTCTGGCTCTGGTCGGTGTGGACAACCATGGAAAGCTCCACATGATCCGTGTGTCCCCCTCCATGGGGCAGTTGTTGGACATGAACACTCTGCTGCGCCACCTGCTGTTCCTACTGGAGTACTGCATGGTGACAGGCTACGACTGGTGGGATGTGCTTCTGCATGTTCAGCCTGGGATGGTCCATAACCTGGTGGAGAAGCTCCATGAGGAGTACATGAGGCAGAATCAAGCCCTGCAGCAGGTGCTGGCTACCCGAATTGTAGCTGTGAAGGCGTCTCTATGTAAGCTGTCGTCTGCTACAGCTGCCCGGGCAAACGACTTCCACGCCAAGCTGCTCCTCATCGCCATCAGCTCGACACTCAAATCTCTGCTCAGACCCCACGTCCTCAACACACCAGACAAAAGCCCAGGAGACAGACTGGCGGAGATCTGCACCAAGAACACAGACACTGaCATTGACAAGGTGATGATTAACCTGAAGACAGAGGAGTTTGTTCTGGATGGACCTCCACTTCAGTCCCTTCAGCAGCTCATTCAATGGGTGGGCGACTTCGTGCTCTACCTGCTTGCCAATCTGCCCAACCAGGGCTCCATAGTTCGCCCAGGCTTCGGCTTCCTGCGGGACGGGCCCTCGCTGGGCATGCTGAGggagatgatggtgatgatccGCATCTGGGGCTTGCTGAAGCCTGGCTGCCTTCCCATCTACACAGCCACCTCTGACAACCAGGACAGCATGTCTCTTCTCTTCCGCCTCCTCACCAAGCTCTGGCTCTGCTCACGGGATGAGAGCCACCCTCAGGAACCGGATGAGACCCTGCTGGATGAATGCTGTCTACTGCCTAGCCAGCTGCTTGTGCCCAGCATGGACTGGCTGCCCATCAACGATGGCGTCATCACCAAAATCCAGAGCAAGCACCAGCTGCGGCTGCAGTTTGGCAAGCCCTACACCCTGCCTGGACTCAACCCCAACTCACAGATGGAGATTTTCTCCAGGAGTCCAGCATCACAGAGGATGGACAACCTGCGCTGTTTACACATGGGTATCTGTCCAACAGAGGAAAGCAAGGCCTGCACCAGGTGTGGCTGTGTAACAATGCTGCGCTCCCCAAACAAGACCAATGCTATGAAACAGTGGGAGCAGCGCTGGATTAAGAACTGTCTGTGTGGAGGACTCTGGAGAAAAATTCCCAACACATGAAACTTTCTGAAATCAGGTCATAGGTCATGGATATTAGATCATGTTCAAAGGATGTGCCACAGTCAGTCCTAAAGCCCCTGTTTGTCCAGCACTATTGCCCAGCTTCTGTGGGTCAGGTGACCGGTGAGTTTGTCAGAATTGCTGTAATGATCCAAACAGAAACAGCATCAATAAAGTGGTATTTTTCATGCCCAGATGATCATGAACGTTCACAATCACGTTTTAACCCTctgtaaatatcagtcatgttttgtattgtttttttgtaatgtttacaATAAATTCCAAGGCAGATTtcga

Function


symbol description
med16 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED16 (mediator complex subunit 16).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 16

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15159 MED16; mediator of RNA polymerase II transcription subunit 16

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022669688.1 True 3314 mRNA 0.51 14 15805602 15826504
Loading

Neighbor


gene id symbol gene type direction distance location
grin3b grin3b,LOC107656093,LOC107723849,LOC107602803,LOC107753820 coding upstream 16713 15669627 ~ 15788889 (+)
wdr18 wdr18 coding upstream 169358 15520524 ~ 15636244 (+)
LOC103032216 NA coding upstream 289107 15500288 ~ 15516495 (+)
arrdc2 arrdc2,LOC108438640,LOC107753823,LOC107692233,LOC107656095 coding upstream 378607 15417332 ~ 15426995 (+)
LOC111192508 NA coding upstream 392033 15404982 ~ 15413569 (+)
plppr3 plppr3,LOC107753813,LOC107593129,LOC107602805,LOC107656087,LOC107723853 coding downstream 1864 15828368 ~ 15851254 (+)
palm palm coding downstream 40200 15866704 ~ 15929841 (+)
misp NA coding downstream 105205 15931709 ~ 15945196 (+)
LOC103035507 LOC108437275 coding downstream 122492 15948996 ~ 15957761 (+)
ptbp1 ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding downstream 136701 15963205 ~ 15976673 (+)
G42814 NA non-coding upstream 384149 15421152 ~ 15421453 (+)
G42813 NA non-coding upstream 384480 15420712 ~ 15421122 (+)
G42810 NA non-coding upstream 390413 15414677 ~ 15415189 (+)
G42807 NA non-coding upstream 426994 15378001 ~ 15378608 (+)
G42763 NA non-coding upstream 639908 15164715 ~ 15165694 (+)
G43035 NA non-coding downstream 208694 16035198 ~ 16037119 (+)
G43063 NA non-coding downstream 425427 16251931 ~ 16253694 (+)
G43062 NA non-coding downstream 425719 16252223 ~ 16261729 (+)
G43097 sgta,LOC106613600 non-coding downstream 564926 16391430 ~ 16398266 (+)
G43136 NA non-coding downstream 689153 16515657 ~ 16530444 (+)
G42605 NA other upstream 906354 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 1671056 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1948241 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 2183560 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 2283345 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 151982 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 614427 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 990097 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1121876 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1185963 17012467 ~ 17017856 (+)

Expression


med16(med16,LOC107723868,LOC107753817,LOC107656090) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

med16(med16,LOC107723868,LOC107753817,LOC107656090) Expression in each Bioproject

Bar chart with 7 bars.
med16(med16,LOC107723868,LOC107753817,LOC107656090) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.

Co-expression Network