LOC103035507 (LOC108437275)


Basic Information

Item Value
gene id LOC103035507
gene name LOC108437275
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15948996 ~ 15957761 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669694.1
tatcttaaaataatgagagcaatttacttaataaaattgaaaatatgtgccggatttttttttattttaggtggcAGGAATGGACTGCCATACAAATGTAGATATGGTTTTGCTTTCACCAAAAGTATTATTTggatgcacaaaaataaatgtggtCAGAATAGGTTTTTTCCCCACAATACCttagaaaaaacacttttggttttggttttaatAAGTCCCTTTAGGGGCTTTGTACAAATATATACCAGCATAAAACTATAGTTCCAGAAAAACTGGGCTGGTAAATAAAATGTAGTTAAATCAGAAAGCagtcttttgtaaaaaaatttatttgagcttaattaaatttgaatattttttttttactttataaggTAGTTTGGTACTAATAATGATGTGAGTAGATGATGTTTAGATAAGATAGGGCTCAGTGTTCTCAAACATTCAGCTGTGAGGCCTTGTCCAGAGCATTAATTTTAGCCAAAGACAAATCAATATGATTGTTGGCAAGGCCAAAACTGATTACATGTAACTGCATTACATAATCAACCTAAAACAGTATCTGTATTACTTAAATATCTTGAATACagttacactttaaaaagagAGTGATTGAATTGAGTGGGTAATATTCTagtgtaaatattatttattacaatactTGTTTATGAGAAAACTTATGTCCTTGCTGACATTAGAAAACACTCTGAATTACTCAATTTCTTTTCTAAATCTAAAAATGCTGAAGAAAAAATTCAGACCAAATTCAGACCAACACCAGACCAGTATAAACCAGTTTAGACTTTTTAGATAAAGATGAAATTCATGCTGGGCTAGTCTGTATGAGTCAGGTAGATGTCTAAACATTTTGGTGCAGTTTCCTGGAAAGGGGATTAAACATGGTTgtagataatatatattttaatggaaaatcttaatttataattaaatgtagtccaagactaggcttaatccttgtcTGAGAAACTACCCCTTAATGCTGAATGTAAATCATCCAAAATACTAAGAATAAAAGCATATTAGttttttctatatctttttacattaactaatgaaatgaataaactaagtaactaagtaaatgaatgaatggtgtatatactgaaataaactattttgagATAACAAAAGCCCCTTACAGTTCTCCACCTGAATATCTACACATCAAAAGACTGTACAAATAGTGCAGTTGTCGAACTTGACTGTCTAGTTTCAAGAAAAATGTATGTGATACAGAGGTAAACCCTCTGTACTATGTATGTACAGGTACCTTTACACAATACCTGAACGTTCACTTCAACTCAGGTTCTctgcacattctctctcttctttaagGTAAAGGGAACTGAAACGCAGCAAAACTTGAGCAACGTAATGGAGAGACTTCTGACTTTAGTGGAGCCTGTGGTGATCATCAACAAACTGGGAACCTCCTTTTTTGAGATGTCGCTGACTCTGACTGTGTACAATGTTTCACTAGAAACGGCAGACGGACAGGTTGACCAGGCCCAAGCGGCCTCCTCTCGCTTCTTCCTCATTCACTCCATCATCTGCACCGTCGCAGCCATGCTGTCCACCGTGCCGCTGGGCCGTGTGGCGGACCGGAGGGGACCGAAAGTGTTTCTGATAATGTCTCAGCTGGGTTCAGTCATGGGCATGTGTGTCCTACTGGTTTTCCTGTTCTGGAAGTTACCTTTGGAGTTCCTGTTCCTGGGTTCTGCAGTGTATGGCCTCAGTGGGGGTGCTCCAGCATACTGGGCTGGTGTGGTGGCGCTGGCGGCCCTCAGCTCCAAGCAGAGGCACCGCACTTTGAAACTGAATGTCGTGGATCTCTGTTATGGGGTTGCAGGGGTCCTGGGTGGTCTACTGTCTGGGTATGTGTATCAGATAGGCCATAAAGGAGTGGTCCTGATTGGGATGGCCATCTCATTCAGTGTGGTCTCTCTCCTCTACTCGACCTTCCTCCTGTCCGGCTCGGTTCAGAACAGTGAGGATAAGGAGCTGCTTCTGTCCCGGGCAGGGAGGAGCGAGAGGACGAACAGAGCGGCGGTGGGTCTGCTGATATCAGCTATGGTGCTGTTCATGCTGGGAATGATCGGAGCAGAGAACATTCTGACGCTGTATGTGCTGAAGCCTCCTCTGAGCTGGGACTCTGTGTGGGCAGGGTACGGCAGGGCTGCTACTGATGCTATGTATTTAAGCAGCTTCTTAGGGGTCCTGGCACTGTCTGGAGTGCTGGGGGACACAGCTCTTACTCTGCTTGGTATTGTATCCAACTGCACTGGGATGGCTATTATGGCGTTCACAATGAAGAGCTGGGTCTACTTCATGGCTCGAGGAATAATGATGTTTGCCTGCGTTCCCATGCCCACGATGAGAGCAATGCTTTCCAAGGTCCTGGATGCACAGCAATACGGTCGTATATTTGGGAGGCTGCAGTTGGTTTTGGCTGTGACTGAGCTCCTCTCTACAGTGATCTTCACCTCCATTTATCCTCTCACTCTGAACTCATTCAGCGGCCTCTGCTTCCTCCTGTCCTGCACCATCAGCTACCTCAGCGTAATCCCAGTCCTATCCCTACAGTTCAGGCAGAGGAGAGAAGATTATCCACCTTTATAAGAGCTTTTTGTCTTGCATTGATACTGTCCCTGACGTCTGCTCTGGTCTGCTAAGGctcattttctctctgttcCTTTTGTCCAAAAACACATGTACAGTGAAAGAGCCTTCAGTATTGGTGGTCCAAAGCTATGGAACTCTGTTCCCCTTTTAAGCCTTAGATGCACGAGTGACTGGACCCTACAGTCACTTCCATAAATAgcattatgtatatttttaatattagcattatttggtccagttaaaaaaGACTCTGATTTGTTTGCATCCATGGTGCAATTCATTTTGGCAGGAGTGAAAATGTACTCACACTCAAGTCTGGACCAAAACAGTCGTACTCCAGtgaggaggtggtctcagtccggTCCCCagtgaactctggactgtttggttgtggtgagaatgtgatccaaCCTCGATCCAACCcaactattaaatatactcTTCATATTTTGAGCGGGTGTTCAGAAGCAATGTCACCTAATTTATTACCCAGCTAATTACTACAGCCACGAACAAAGGCCACTGCTCCATGCTAAATTGCTCTGAAATACATGGGGTTAATAATTGTATTTAGGTTTAAAACAGAttactgttattgttattgttattattattattttttaaagttttttattttttctgcatcACTGCAACACAATGTCtactagtatatatttatttttataatccaCTTTGCCACATGGCATTTTGCTTAATTTAGCTCACAGTTTGCTACAGTTTATTAGGCAAACATTTaaatttctcatttaaaaaaaatacaaaataaataacagaggAACAAGGGGAAATGATAAACAGATGTTTGGAAGATTGTAGTTATAATAATTAAGGtaacattccaaataaaaacaaattgattacttaaattagttattttaattttaaccaacttttt

Function

NR:

description
PREDICTED: thymic stromal cotransporter homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669694.1 True 3562 mRNA 0.40 6 15948996 15957761

Neighbor

gene id symbol gene type direction distance location
misp NA coding upstream 3800 15931709 ~ 15945196 (+)
palm palm coding upstream 19155 15866704 ~ 15929841 (+)
plppr3 plppr3,LOC107753813,LOC107593129,LOC107602805,LOC107656087,LOC107723853 coding upstream 97742 15828368 ~ 15851254 (+)
med16 med16,LOC107723868,LOC107753817,LOC107656090 coding upstream 122492 15805602 ~ 15826504 (+)
grin3b grin3b,LOC107656093,LOC107723849,LOC107602803,LOC107753820 coding upstream 160107 15669627 ~ 15788889 (+)
ptbp1 ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding downstream 5444 15963205 ~ 15976673 (+)
LOC103036428 efna2,LOC108270832,LOC107674568,LOC106574064,LOC107602810 coding downstream 96898 16054659 ~ 16200071 (+)
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding downstream 358826 16316587 ~ 16352239 (+)
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding downstream 400956 16358717 ~ 16365153 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding downstream 441783 16399544 ~ 16412008 (+)
G42814 NA non-coding upstream 527543 15421152 ~ 15421453 (+)
G42813 NA non-coding upstream 527874 15420712 ~ 15421122 (+)
G42810 NA non-coding upstream 533807 15414677 ~ 15415189 (+)
G42807 NA non-coding upstream 570388 15378001 ~ 15378608 (+)
G42763 NA non-coding upstream 783302 15164715 ~ 15165694 (+)
G43035 NA non-coding downstream 77437 16035198 ~ 16037119 (+)
G43063 NA non-coding downstream 294170 16251931 ~ 16253694 (+)
G43062 NA non-coding downstream 294462 16252223 ~ 16261729 (+)
G43097 sgta,LOC106613600 non-coding downstream 433669 16391430 ~ 16398266 (+)
G43136 NA non-coding downstream 557896 16515657 ~ 16530444 (+)
G42605 NA other upstream 1049748 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 1814450 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2091635 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 2326954 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 2426739 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 20725 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 483170 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 858840 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 990619 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1054706 17012467 ~ 17017856 (+)

Expression


Co-expression Network