gamt (gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217)


Basic Information

Item Value
gene id gamt
gene name gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 17053411 ~ 17057107 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669715.1
TAATGCTCCTTATCAAGAGGGCTTAGCTGAAGTGCACGTCTACCACTTTACGGTGTCTTGCACAGTCAGCAGTTCTTTCAATATATAACACTGGTGCTCAGGGCAGCAGTCTCTTTTCGGCCACTGAGCACAGGCTCACCACAGCAGCTCCCCTTTCCCCAAGTCTAATATTAGCATTAACGCAGCCATGACCACCGAACAGCCCATTTTCTCAAAAGGAGAGGACTGCAAGCCCGGCTGGCACAACGCGTCCGCCGACTACAATGCAGCCGACACACACCTGGAGATTTTGGGAAAGCCCGTTATGGAGCGCTGGGAGACTCCATACATGCACTCTTTGGCCACTGTAGCCGCATCGAAAGGTGGCCGGGTTCTTGAGATTGGCTTTGGAATGGCAATCGCTGCCACTAAAGTTGAATCCTTTCCCATTGAGGAACACTGGATTATCGAGTGCAATGATGGTGTTTTTCAGAGGCTACAGGAATGGGCCAAGATTCAGCCACACAAAGTCGTTCCCCTCAAAGGTTTATGGGAAGACGTCGTACCCACCCTGCCTGACAATCATTTTGATGgaATCCTTTACGACACATATCCACTGACAGAGGACACATGGCACACTCATCAGTTTAACTTTATTAAGGGCCATGCTAAGAGGCTGCTGAAATCTGGTGGTGTCCTGACTTACTGCAACCTTACTTCCTGGGGTGAATTCCTGAAGTCCAAATATGACAACATCGACAAAATGTTCCAGGAAACACAGGTGCCCCAGCTGCTGGAGGCCGGCTtcaaaaaggaaaacatgagCACCACACTGATGGACATCAGTCCACCAAGTGAATGCAAATACTATTCCTTCAACAAAATGATCACACCCACGATCCTTAAAGAATAAGCTACGAAACCAAGCTACCTTCCTCCTGATGATTCTGCTGTGCCTTTTATGCCACCTCTGTCTTATAACggtttaaaatgttcattttctgATCTCTTTTAACATAAAATTGCATTGGATGATCTGTTTTATAGTTAAAATTAactaatatttataaatgtttatataatattttaatgaaactcatgaaataaaaatatacaacacTGTGAAATGTGATGAAGCCAACTATACTGAAGAAATGTCACTCTAATAACTCAGATTTTTAAGAGAAACACTGCAATATtgtaaagcaaaaaataaaatttcctgaaacatttttaaa

Function

symbol description
gamt Predicted to enable guanidinoacetate N-methyltransferase activity. Predicted to be involved in creatine biosynthetic process. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and yolk. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and guanidinoacetate methyltransferase deficiency. Orthologous to human GAMT (guanidinoacetate N-methyltransferase).

NR:

description
guanidinoacetate N-methyltransferase

GO:

id name namespace
GO:0006601 creatine biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0030731 guanidinoacetate N-methyltransferase activity molecular_function

KEGG:

id description
K00542 GAMT; guanidinoacetate N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669715.1 True 1217 mRNA 0.43 6 17053411 17057107

Neighbor

gene id symbol gene type direction distance location
abhd8 abhd8 coding upstream 26287 17018329 ~ 17027124 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding upstream 42886 16975644 ~ 17010525 (+)
plvap NA coding upstream 106434 16945290 ~ 16946977 (+)
babam1 babam1,LOC107597198 coding upstream 116505 16931500 ~ 16936906 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding upstream 190250 16860122 ~ 16863161 (+)
tmem38a tmem38a,LOC107730482,LOC107658508,LOC107751025 coding downstream 189974 17247081 ~ 17253787 (+)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding downstream 202258 17259365 ~ 17269526 (+)
ddx49 ddx49,LOC107757937,LOC107747066 coding downstream 244972 17302079 ~ 17307013 (+)
lsm4 lsm4,LOC107680485 coding downstream 250501 17307608 ~ 17310257 (+)
dnase2b NA coding downstream 1102450 18159557 ~ 18166817 (+)
G43248 dazap1 non-coding upstream 6302 17038571 ~ 17047109 (+)
G43233 NA non-coding upstream 22016 17030509 ~ 17031395 (+)
G43198 NA non-coding upstream 210406 16838491 ~ 16843005 (+)
G43196 NA non-coding upstream 265799 16786571 ~ 16787612 (+)
G43188 NA non-coding upstream 304733 16747826 ~ 16748678 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding downstream 1302 17058409 ~ 17063971 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding downstream 8240 17065347 ~ 17072232 (+)
G43253 NA non-coding downstream 19585 17076692 ~ 17080295 (+)
G43254 NA non-coding downstream 23244 17080351 ~ 17083008 (+)
G43363 pex11g non-coding downstream 143190 17200297 ~ 17202840 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other upstream 35555 17012467 ~ 17017856 (+)
LOC111192574 NA other upstream 103051 16948380 ~ 16950360 (+)
LOC103044285 NA other upstream 234160 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 607124 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 1068779 15978486 ~ 15984632 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 136431 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 575989 17633096 ~ 17768954 (+)
G43537 NA other downstream 955066 18012173 ~ 18014499 (+)
prkacb prkacb,LOC108411205,LOC108267323,LOC103034112,LOC107745335,LOC107669012 other downstream 1066639 18123746 ~ 18143539 (+)
samd13 samd13,LOC107592550 other downstream 1088092 18145199 ~ 18152349 (+)

Expression


Co-expression Network