comp (comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026)


Basic Information

Item Value
gene id comp
gene name comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 17259365 ~ 17269526 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669728.1
TGGATGAATTGCACAGTAAACCAGGCATCCTAGAGGACAGCATTGCAAAAATGCCCTGGATTGTGTTATTATTTGGATTTCTTAATCTGGGTGTAACTATAGTGTCCGGGCAAGCAGCTTCAAGAGATGGAGAGAtaataaaacagataaaggGCACAAACCAGGCCCTGGCAGAAATCAAGGAACTCCTGAAACAACAGATAGAAGAAATTGTGTTCCTAAAGAACACAGTAATGGAGTGTGAGGCCTGCGGAATGCGTTCAGACGTTGTGGAACCAAAACCGAAGCCGTCCTGTGTTCCAAATCCCTGCCACCCAGGTGTGGAGTGTATTGAGACAGCCAATGGAATCAAATGTGGGTCATGTCCAGAGGGCACCGTGGGCAACGGCACCCACTGCACAGACATAGATGAGtGTACCATACAACCATGTCACATGGGTGTGAGATGTATCAACACCTCTCCTGGTTTCCGCTGTGGTCTTTGTCCCGCTGGCTATACAGGTCCTCAGGTACAAGGAGTCGGACTCGCCTACGCTAAAGCCAACAAACAGGTTTGTAAAGACATAAACGAGTGTGAAACCTCAAACGGAGGCTGTGTTGTAAACTCCATCTGTCAGAACACCCCGGGATCTTTTCGCTGTGGCCCCTGTAAGCCAGGCTATGTTGGAGATCAGACCCGGGGATGTAAACCTGAGAGGGCTTGTGGAAATGGCCAGCCCAATCCCTGCCATCCCAGTGCTGAGTGTATCATCCACAGGGATGGCAATATAGAATGTGCTTGTGCAGTTGGATGGGCTGGAAATGGCTATGTTTGTGGACCAGACACAGATATCGATGGCTTCCCGGATGAGAAACTACAATGTCCTGAAAGAAACTGTGCTAAGGACAACTGTCTTACTGTACCAAATTCTGGCCAAGAAGACGCTGACAGAGATGCCATTGGAGATGCATGTGATGATGACGCAGATGGAGATGGAATTCTAAATATTGAGGACAACTGCGTACTTGTCCCAAATGTGAACCAGAAAAATGCAGACCAGGATGACTATGGAGATGCTTGTGACAACTGCCGGCTGGCTAAAAATAATGACCAAAAAGACACAGACCTCGATGGAAAGGGTGATGCATGCGATGATGATATCGATGGTGATGGgattaaaaatgacaaagacAACTGCAAGAAGGTTCCCAATGTAGACCAGATTGATCGAGATGGTGACAATGTTGGGGATGCGTGCGACAGTTGCCCTTATGTTCGCAATCCTGACCAGCTGGACATGGATAACGATTTGATTGGTGATCCATGCGACACCAACAAGGATAGTGATGGAGATGGTCATCAGGACTCAAGAGACAATTGTCCTGCAGTCATCAACAGCTCTCAACTGGATACAGACAAAGACGGCAAGGGGGATGAATGtgacgatgatgatgacaaTGACGGCATCCCTGATCTTCTTCCTCCAGGGCCAGATAATTGTAGGCTCGTCCCCAATCCACTACAGGAAGACTTGGACGGGGATGGGATTGGAAATGCCTGTGAAAGGGACTTTGACAATGACACAATTATTGACACAATTGATGTGTGCCCTGAGAATGCCGAGGTCACCCTTACTGACTTCAGAGCTTACCAGACTGTGGTGTTGGATCCAGAGGGAGATGCACAGATAGATCCAAACTGGGAGGTGCTGAATCAGGGAAAAGAAATTGTTCAAACTATGAACAGTGACCCTGGACTGGCTGTTGGTTACACAGCTTTCAACGGAGTGGACTTTGAAGGGACGTTTCATGTAAATACAGTAACGGATGACGACTACGCTGGCTTTATCTTTGGGTATCAGGACAGCTCCAGTTTTTATGTGGTAATGTGGAAACAGGTTGAGCAGATCTATTGGCAGGCTAATCCTTTCCGAGCCGTGGCTGAACCAGGGATCCAACTCAAGGCTGTAAAATCAGACACAGGGCCTGGAGAGAACCTGCGGAACTCACTTTGGCACACAGGTGACACCCCGAACCAGGTGAAGCTGCTGTGGAAAGATCCAAGAAATGTAGGCTGGAAGGACAAGACATCTTACCGCTGGTTCCTGCAGCACAGACCTCATGATGGGTACATCAGGGTTCGTTTCTATGAGGGTCCACAGATGGTTGCAGATACAGGAATTATAATTGACACAACCATGAGAGGCGGCAGACTAGGAGTATTCTGCTTTTCGCAGGAGAACATCATCTGGGCCAACCTACGCTACAGATGCAATGATACCCTTCCAGAGGACTTCGACACATACAGAGCCCAGCAAATCAGGCTTTAAATTTAACATCAGGCACAGTCCCAAAGTCATTCTGCCCATACCTTCGCAATGACTTCTCTAGATCACATTAACAATCTGTAAATAGCTGAAAGATGGTGATCACATTATACAAAAGCTGTACAAAAATAAGAGCGCATATGCCTTATGTGTATACTTTATTCATGTTCTTTACCTCTAGAGACTTCAAAATGAAGACGGATGCTGatagtttattatattttggtaaggtgtcaaaataaaagtcatcattaactgtaaaaa

Function

symbol description
comp Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Is expressed in several structures, including head mesenchyme; heart primordium; mesoderm; pectoral fin; and somite. Human ortholog(s) of this gene implicated in carpal tunnel syndrome; multiple epiphyseal dysplasia 1; osteochondrodysplasia; and pseudoachondroplasia. Orthologous to human COMP (cartilage oligomeric matrix protein).

NR:

description
thrombospondin-4-like

GO: NA

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669728.1 True 2570 mRNA 0.46 19 17259365 17269526

Neighbor

gene id symbol gene type direction distance location
tmem38a tmem38a,LOC107730482,LOC107658508,LOC107751025 coding upstream 5578 17247081 ~ 17253787 (+)
gamt gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217 coding upstream 202258 17053411 ~ 17057107 (+)
abhd8 abhd8 coding upstream 232241 17018329 ~ 17027124 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding upstream 248840 16975644 ~ 17010525 (+)
plvap NA coding upstream 312388 16945290 ~ 16946977 (+)
ddx49 ddx49,LOC107757937,LOC107747066 coding downstream 32553 17302079 ~ 17307013 (+)
lsm4 lsm4,LOC107680485 coding downstream 38082 17307608 ~ 17310257 (+)
dnase2b NA coding downstream 890031 18159557 ~ 18166817 (+)
rpf1 rpf1 coding downstream 900167 18169693 ~ 18175127 (+)
ctbs ctbs coding downstream 907421 18176947 ~ 18181454 (+)
G43363 pex11g non-coding upstream 56525 17200297 ~ 17202840 (+)
G43254 NA non-coding upstream 176357 17080351 ~ 17083008 (+)
G43253 NA non-coding upstream 179070 17076692 ~ 17080295 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding upstream 187133 17065347 ~ 17072232 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding upstream 195394 17058409 ~ 17063971 (+)
G43382 NA non-coding downstream 2773 17272299 ~ 17275365 (+)
LOC111192514 NA non-coding downstream 181514 17451040 ~ 17478044 (+)
G43414 NA non-coding downstream 214150 17483676 ~ 17486811 (+)
G43483 NA non-coding downstream 485782 17755308 ~ 17756157 (+)
G43561 uric,LOC103030682,LOC108430123,LOC100136464,LOC105895190,LOC103392251,LOC102300275,LOC102208991 non-coding downstream 883334 18152860 ~ 18157853 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other upstream 63249 17193538 ~ 17196116 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other upstream 241509 17012467 ~ 17017856 (+)
LOC111192574 NA other upstream 309005 16948380 ~ 16950360 (+)
LOC103044285 NA other upstream 440114 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 813078 16440931 ~ 16446287 (+)
adgrl2 adgrl2 other downstream 363570 17633096 ~ 17768954 (+)
G43537 NA other downstream 742647 18012173 ~ 18014499 (+)
prkacb prkacb,LOC108411205,LOC108267323,LOC103034112,LOC107745335,LOC107669012 other downstream 854220 18123746 ~ 18143539 (+)
samd13 samd13,LOC107592550 other downstream 875673 18145199 ~ 18152349 (+)
G43568 LOC108270632,LOC108261872 other downstream 917513 18187039 ~ 18240232 (+)

Expression


Co-expression Network