G47299


Basic Information

Item Value
gene id G47299
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11415438 ~ 11415704 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53800
CGGGGCTTGACTTGTTGTCATATGAGGAAGTTTAAACAAGGTTTAAAGGGTTAGTTCACACAAAAATGAAAATAATGTCATTTATTACTCACCCTCATGTTGTTCTACACCCGTAAGACCTTCGTTCATTTTCGGAACACAAATTAAGATATTTTTGATGAAATGTCACCAAACTTTTCAAGATCCAGAAAGGTACTCAAAACATATTTAAAACAGTTAGTGTGAGTACAGTGGTTCTACCTCAATATTATAAAGCGACGAGAATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53800 True 267 lncRNA 0.34 1 11415438 11415704

Neighbor

gene id symbol gene type direction distance location
CI01000006_11395393_11412606 NA coding upstream 2832 11395123 ~ 11412606 (+)
CI01000006_11362605_11384441 NA coding upstream 30351 11362605 ~ 11385087 (+)
CI01000006_11298514_11313005 NA coding upstream 102053 11298372 ~ 11313385 (+)
CI01000006_11178091_11284993 DFNB31, DFNB31A, WHRN coding upstream 130407 11177136 ~ 11285031 (+)
CI01000006_11143743_11157316 MAN1B1A coding upstream 256851 11143743 ~ 11158587 (+)
CI01000006_11429439_11432136 NA coding downstream 13070 11428774 ~ 11432797 (+)
CI01000006_11436920_11440304 NA coding downstream 21216 11436920 ~ 11440304 (+)
CI01000006_11452997_11455817 POU5F3 coding downstream 36537 11452241 ~ 11456562 (+)
CI01000006_11469982_11473164 CLIC4, CLIC3 coding downstream 53425 11469129 ~ 11473627 (+)
CI01000006_11476139_11503761 PNPLA7 coding downstream 60435 11476139 ~ 11504598 (+)
G47298 NA non-coding upstream 259 11414756 ~ 11415179 (+)
G47163 NA non-coding upstream 22488 11387203 ~ 11392950 (+)
G47164 NA non-coding upstream 93768 11314523 ~ 11321670 (+)
G47184 NA non-coding upstream 124943 11287486 ~ 11290495 (+)
G47194 NA non-coding upstream 230268 11104661 ~ 11185170 (+)
G47315 NA non-coding downstream 111084 11526788 ~ 11527016 (+)
G47362 NA non-coding downstream 252670 11668374 ~ 11668589 (+)
G47368 NA non-coding downstream 268931 11684635 ~ 11684975 (+)
G47145 NA other upstream 903632 10485358 ~ 10511806 (+)
G46652 NA other upstream 1256187 10156579 ~ 10159251 (+)
G45416 NA other upstream 2580741 8818814 ~ 8834697 (+)
G45355 NA other upstream 3203050 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 3215293 8197881 ~ 8200145 (+)
G47159 NA other downstream 525 11416229 ~ 11521703 (+)
G47318 NA other downstream 208563 11624267 ~ 11638252 (+)
G48094 NA other downstream 861916 12277620 ~ 12279541 (+)
G48081 NA other downstream 961302 12377006 ~ 12384827 (+)

Expression


Co-expression Network