G47159


Basic Information

Item Value
gene id G47159
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11416229 ~ 11521703 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53635
TCTTTATAAGCGGAGGTCCTCCTTCTCCTCCTCCCTCCTGCCGCAATCTCTCTCCTCTATCTTTAGCTCTGTACCACACGGGCAGCGGCTTAACGCTCTTCTTGAGTTTACGCTTTCATCCCTATTCGGGCCGGTTTGTATCTCTCAATCGTCCATCCGACCCACACAGATGATGACACTCTGGAGCTTTTATCTGCTGTCCTGGACTTGAGAAGCGCAGTGAATGATGTTGTTTTCCCCGAGCCGGAGCGCACGGCAAGCCCGGGCCTCCCTCCTTCTACCCGGGGTCTTGATCTGCGTAATCCTCGCCGCCGTCGGTGCGAGTATGCCGGCAAACAAGTGCCCCGATCACATAGACTGTGCCAGGATGCGGCGGCACTTATCCAAATCTGGATCCTGCCACTGTGGCCCCTGCCTTACCCCATTGGAGGAAGATGAATTGGGACTTTGTGTTGATCACAGGAGACACAATCCCCAGCACCACCTCCAAGTGATCTCCTATCATGACGTTGATGAAGAAATCGACCATCTGTCCTCTTTCATTGCCAAGCAGCAAATGTCAGAAGTCAAGCAGCCAGAGTCTCCTCTACAATCCCGGTCAGAATCGAAGCAGAAGAGTCTGCCCAAACCCACAACCATAGAACTAACAACCAGCAGCCCATCGACACCACAACACCACACTCCTAAATCTCCCCAGCCAATCACAAACTCGTCCGATCGTCATGGGCCGATCGCTTCCCCCAACACTTCCAGAGACAGCCTGCTAGTCTGTATGTGTCTTTCGACTTTGTTTTTTTTGTTTTTTTTAATAAGGTCTAATTA
>TU53639
TCTTTATAAGCGGAGGTCCTCCTTCTCCTCCTCCCTCCTGCCGCAATCTCTCTCCTCTATCTTTAGCTCTGTACCACACGGGCAGCGGCTTAACGCTCTTCTTGAGTTTACGCTTTCATCCCTATTCGGGCCGGTTTGTATCTCTCAATCGTCCATCCGACCCACACAGATGATGACACTCTGGAGCTTTTATCTGCTGTCCTGGACTTGAGAAGCGCAGTGAATGATGTTGTTTTCCCCGAGCCGGAGCGCACGGCAAGCCCGGGCCTCCCTCCTTCTACCCGGGGTCTTGATCTGCGTAATCCTCGCCGCCGTCGGTGCGAGTATGCCGGCAAACAAGTGCCCCGATCACATAGACTGTGCCAGGATGCGGCGGCACTTATCCAAATCTGGATCCTGCCACTGTGGCCCCTGCCTTACCCCATTGGAGGAAGATGAATTGGGACTTTGTGTTGATCACAGGAGACACAATCCCCAGCACCACCTCCAAGTGATCTCCTATCATGACGTTGATGAAGAAATCGACCATCTGTCCTCTTTCATTGCCAAGCAGCAAATGTCAGAAGTCAAGCAGCCAGAGTCTCCTCTACAATCCCGGTCAGAATCGAAGCAGAAGAGTCTGCCCAAACCCACAACCATAGAACTAACAACCAGCAGCCCATCGACACCACAACACCACACTCCTAAATCTCCCCAGCCAATCACAAACTCGTCCGATCGTCATGGGCCGATCGCTTCCCCCAACACTTCCAGAGACAGCCTGCTAGTCTGTATGTGTTCTTTATGCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU53635 False 332 TUCP 0.52 1 11416229 11416560
TU53639 True 343 TUCP 0.53 2 11416229 11521703

Neighbor

gene id symbol gene type direction distance location
CI01000006_11395393_11412606 NA coding upstream 3623 11395123 ~ 11412606 (+)
CI01000006_11362605_11384441 NA coding upstream 31142 11362605 ~ 11385087 (+)
CI01000006_11298514_11313005 NA coding upstream 102844 11298372 ~ 11313385 (+)
CI01000006_11178091_11284993 DFNB31, DFNB31A, WHRN coding upstream 131198 11177136 ~ 11285031 (+)
CI01000006_11143743_11157316 MAN1B1A coding upstream 257642 11143743 ~ 11158587 (+)
CI01000006_11546432_11575289 NSMFA coding downstream 24729 11546432 ~ 11575476 (+)
CI01000006_11704767_11714559 WDR34 coding downstream 183064 11704767 ~ 11714661 (+)
CI01000006_11751944_11752854 NA coding downstream 229151 11750854 ~ 11753218 (+)
CI01000006_11784520_11803562 NA coding downstream 260328 11782031 ~ 11803850 (+)
CI01000006_11888383_11923287 NA coding downstream 366489 11888192 ~ 11924390 (+)
G47299 NA non-coding upstream 525 11415438 ~ 11415704 (+)
G47298 NA non-coding upstream 1050 11414756 ~ 11415179 (+)
G47163 NA non-coding upstream 23279 11387203 ~ 11392950 (+)
G47164 NA non-coding upstream 94559 11314523 ~ 11321670 (+)
G47184 NA non-coding upstream 125734 11287486 ~ 11290495 (+)
G47315 NA non-coding downstream 5085 11526788 ~ 11527016 (+)
G47362 NA non-coding downstream 146671 11668374 ~ 11668589 (+)
G47368 NA non-coding downstream 162932 11684635 ~ 11684975 (+)
G47333 NA non-coding downstream 192983 11714686 ~ 11720080 (+)
G47390 NA non-coding downstream 268508 11790211 ~ 11790433 (+)
G47145 NA other upstream 904423 10485358 ~ 10511806 (+)
G46652 NA other upstream 1256978 10156579 ~ 10159251 (+)
G45416 NA other upstream 2581532 8818814 ~ 8834697 (+)
G45355 NA other upstream 3203841 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 3216084 8197881 ~ 8200145 (+)
G47318 NA other downstream 102564 11624267 ~ 11638252 (+)
G48094 NA other downstream 755917 12277620 ~ 12279541 (+)
G48081 NA other downstream 855303 12377006 ~ 12384827 (+)

Expression


Co-expression Network