G47812


Basic Information

Item Value
gene id G47812
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11503578 ~ 11504962 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU54414
CAAGACAAAAGCAAAATGCAGTTTATTAGAAATCAGAATTTTAAGGCGTTTGCAAAATGACACCAGATTCTCCTGAACAATTGCAGGATTGTTCCAAAAGATTCACCACAAATCTCTAAATTAATGTCAGTCATGGCAACATAATCAAAACACAAACATTACCTCATACATGTATATTAACCAATACTGGCATTATGATTAGACTGTTAATACAATTCGGGATTTATTACCCATTACCATTGTCTTGTATGGCTGCTATTAAGGTTAAAAGGCACTACAGGTATCACACAGGTATTTTTTTTTTTACAACAAAAACAAAAAATATAAAAAAAATATTGCATTGATAGGCTTGCATTTTTGCTTGTGTTTGATCACATGCAGCTAGAGGTATGATTAACTTATCAGACATATTCGGTATGATCTACGACACTGGTTAGTTTAAATCGATCACTCAACTGTTCACAGATCAGGTACCCCTCAGCAAGGAGTCGCTGACCTGCGTGAAACAGCCAAGCTGTGGGACAAATCGACTTGTCAAATGGTCTTTGAGAGGTTTAAATGAAAGAAAAAGTCAACATCAGTCATCTGAGCTTATAAATAGTGAACTCTACAGTCTATATTTTTCTTTTTTCTCTCTAAATCATCATTTCACTGTTTTCTGCTACCTTCATTGACAGTAGAAAGAATCCGTACACGCAATCTAATCTAACTGTTTGTAAAAGCAATGTTGTAGCTGATTGTCTTACTCACTGGTCATTCAAGATGGACTAAAGTTCAGACTTCGCAATCAAAAGAGTTCATAGTCAGCATGAAACTTCACAGAAACTCTGAGATAGTCTAGAGTTACCGCTGAGATGCAAGGACTCGTATCATTTCAACCCCATGCCGTGTTACCCAGTGCAATAGTACAGAAAAAGATGTTTTCTTAGGATTTTTTTGCACAAGAGGACTCATTTTTTTGCTCCTCAAGGTCTGGATGTACTTGGTTGGAGTGTTACTGGAATGTGTAGACAGGGCCAAACCCCAAATCATAGGAGTGTCAGTGTTTGTACACTGCCATGCTGACATCTGGGTCAGTGCTCAGGATGGAGGGATTCCTGTCCGTGTGCTTTTCTGGTGTGGAGGGTGGGAGGGCTGTTAGGGCTGGAAGTTTGCGGCGTTTTGGAGGACACAGGCCCCAGGTTTTCCACGTCAGAACGTACACGCTGTCTGCGAGTCCTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54414 True 1223 lncRNA 0.43 3 11503578 11504962

Neighbor

gene id symbol gene type direction distance location
CI01000006_11459706_11462546 NA coding downstream 40973 11459288 ~ 11462605 (-)
CI01000006_11388077_11391485 NA coding downstream 112093 11387494 ~ 11391485 (-)
CI01000006_11320839_11338355 STXBP1, STXBP1A coding downstream 165223 11320462 ~ 11338355 (-)
CI01000006_10676705_10699710 NA coding downstream 803696 10676367 ~ 10699882 (-)
CI01000006_10499329_10508831 NA coding downstream 993923 10499240 ~ 10509655 (-)
CI01000006_11530728_11535297 NA coding upstream 25404 11530366 ~ 11535900 (-)
CI01000006_11596063_11609407 NA coding upstream 90677 11595639 ~ 11609407 (-)
CI01000006_11627878_11631177 NA coding upstream 122232 11627194 ~ 11631177 (-)
CI01000006_11636228_11638176 CAMKK2 coding upstream 131266 11636228 ~ 11638176 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 coding upstream 145951 11650363 ~ 11654424 (-)
G47806 NA non-coding downstream 21077 11479106 ~ 11482501 (-)
G47758 NA non-coding downstream 211097 11287635 ~ 11292481 (-)
G47681 NA non-coding downstream 388067 11111614 ~ 11115511 (-)
G47673 NA non-coding downstream 434530 11063673 ~ 11069048 (-)
G47668 NA non-coding downstream 447997 11054903 ~ 11055581 (-)
G47853 NA non-coding upstream 135467 11640429 ~ 11641264 (-)
G47854 NA non-coding upstream 140565 11645527 ~ 11648165 (-)
G47705 NA non-coding upstream 199965 11704927 ~ 11708257 (-)
G47861 NA non-coding upstream 260272 11765234 ~ 11765587 (-)
G47863 NA non-coding upstream 264976 11769938 ~ 11770242 (-)
G47658 NA other downstream 470451 11030911 ~ 11033127 (-)
CI01000006_10453630_10483241 NA other downstream 1015143 10453613 ~ 10484006 (-)
CI01000006_07500281_07507754 NA other downstream 3992622 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 4526706 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 6941510 4559509 ~ 4562068 (-)
CI01000006_12348300_12348961 GLRX other upstream 829447 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 845797 12569205 ~ 12582487 (-)

Expression


Co-expression Network