LOC107197696


Basic Information

Item Value
gene id LOC107197696
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 7826523 ~ 7826914 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_001518717.2
TTGGTAATTTAATTTCGTTTGTCTAGTTTTAATGACATCATCACTAGTAGCCTGTTAGTGAGTACAGTGAAGCAAGCATGGTTGTACCTGCCGAATAATCCTGTTCCATCTACCATCTGCTCAAGCTCTTTTCAAGCATCGTTGTTTTACCTTTTCTCAACTTGCTACATTAAACAAGTAAACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_001518717.2 True 185 ncRNA 0.37 2 7826523 7826914

Neighbor

gene id symbol gene type direction distance location
pcdh17 pcdh17,LOC107572292,LOC107687749,LOC107739552,LOC107718221 coding upstream 812736 6877772 ~ 7013787 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC108439929,LOC107551808 coding upstream 1990436 5814514 ~ 5836087 (+)
adamts17 adamts17 coding upstream 2047249 5762651 ~ 5779274 (+)
cers3 cers3 coding upstream 2076158 5722876 ~ 5750365 (+)
lins1 NA coding upstream 2108588 5709700 ~ 5717935 (+)
xxylt1 xxylt1 coding downstream 275361 8102275 ~ 8162958 (+)
lsg1 lsg1,LOC107715771,LOC107736209 coding downstream 534923 8361837 ~ 8377825 (+)
tmem44 NA coding downstream 555342 8382256 ~ 8400857 (+)
atp13a3 atp13a3,LOC106613657 coding downstream 632601 8459515 ~ 8498939 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding downstream 725056 8551970 ~ 8636478 (+)
G40910 NA non-coding upstream 36917 7788450 ~ 7789606 (+)
G40902 NA non-coding upstream 113940 7712334 ~ 7712583 (+)
G40842 NA non-coding upstream 313841 7509178 ~ 7512682 (+)
G40839 NA non-coding upstream 330963 7495329 ~ 7495560 (+)
G40838 NA non-coding upstream 343421 7482758 ~ 7483102 (+)
G40916 NA non-coding downstream 141202 7968116 ~ 7968423 (+)
G40947 NA non-coding downstream 336797 8163711 ~ 8164067 (+)
G40949 NA non-coding downstream 338038 8164952 ~ 8165271 (+)
G40950 NA non-coding downstream 338477 8165391 ~ 8165661 (+)
G40952 NA non-coding downstream 340865 8167779 ~ 8169537 (+)
G40756 NA other upstream 1292849 6533365 ~ 6533674 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other upstream 2514179 5305687 ~ 5312344 (+)
LOC103046723 LOC108439632 other upstream 3310912 4504397 ~ 4515611 (+)
G40318 NA other upstream 3690938 4134510 ~ 4135585 (+)
LOC103044341 nlgn1,LOC107564928 other upstream 3970049 3837507 ~ 3856474 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other downstream 685190 8512104 ~ 8524313 (+)
LOC103027717 LOC108428455 other downstream 891646 8718560 ~ 8762792 (+)
LOC103022991 NA other downstream 1095014 8921928 ~ 8935486 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 2168795 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 3744312 11571226 ~ 11580329 (+)

Expression


Co-expression Network