LOC107197698


Basic Information

Item Value
gene id LOC107197698
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12432027 ~ 12437339 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_001518718.2
GTCGGCGTGGGGGAAAGCGTGCTGTTTGTTTTACATGAGAGATTGTTGGATGTGGAGTTCTATCGCTCCGGCGAAGTTTTGGAAATTTAGCCTCTGTGTTTTATATATCAAACTCTCGCTTTTTCCCAAACATttagttctttctctctctggactCTCAGCGACGTGTGGACGGGTTTGACTGGGCGCGCCTGAACACAACACGTAGTTCACTCTCCGTTAGACACTCCAGtgtgcGTTAAAAATCCATGCATCCATGTTTGGAATTCGTGGTGGGCTTCGGACCACGTGACAAGATATTTAAGAAGTGAGTCGAGAAACACCGATACTGACATCAACAAGTAGGTAACAAATCTCCTCTCCCACAGTTTAACTGCACACGGCAGCGACGACGTCAAAACATTCTCAACAAGACCTTCACGCTTACTGCAGATTTACCACTTCATATGTACAGATGAACAGGTGAGAATCCAGCCTCTTCACATGATTTTACTCTCACTAATAAAAGGGgggaaaataaacacttaaaacattaaaacggAGAAATTCACACATAGTTAGGGTAGCCTGAAACGAGAGGTCTGTAAAAGTCTTCTTGGCACGTTTATGGCAAGTGTCGCACCTGGTATTAACAGCTTTTATTAGGAAACCAATTaatatttctgcataattaaATGGTTAACATGATAGGAGtttgtcaaaaatgttttttttttttttttttaactgcaacATATACTGCTTGTGGTTTTAGAGGCACTGAAACTACTTACCTAAAACTATTTTACTTTCAAAAAGTGAATCAAAATGTCTGGAGTAAGTTTACTTTACTATAGTTTCTGACTGACTAGTTTTCTGATTAAATTTACAGTGAACAACTGTCTTGAACAGTATCACAACTTAGCTGCaccataaaaaaa
>XR_002649938.1
CACAAAATAATAGCAAGTATTGTTCAAAACtcagtttaaagttttttaatgtatttatgtagTAAAGATAATATTCAACTCATATTGATTTAACTCAGCTCGATATGTTAATGGTATTGATTGCTGTATTTAGTTGTTTGATATTTTGGTAATTGTCGTACGTTAACGTTGCTCTTTTGGGGTGGCGTGTTACGTGTCAGTAGGGcacgtatatattttttttgtgtgtgttttctcttcccttgctctctctactctctatttTATATTCTCTGAAGGTTGTGTTGAACGCTGCATTGCCGTTTGGCTGTGTCTACCGTCCAATTGAAATCGCTGCTGTTGAAATGGGCGGTCCTTGGCAGttctttctctctctggactCTCAGCGACGTGTGGACGGGTTTGACTGGGCGCGCCTGAACACAACACGTAGTTCACTCTCCGTTAGACACTCCAGtgtgcGTTAAAAATCCATGCATCCATGTTTGGAATTCGTGGTGGGCTTCGGACCACGTGACAAGATATTTAAGAAGTGAGTCGAGAAACACCGATACTGACATCAACAAGTAGGTAACAAATCTCCTCTCCCACAGTTTAACTGCACACGGCAGCGACGACGTCAAAACATTCTCAACAAGACCTTCACGCTTACTGCAGATTTACCACTTCATATGTACAGATGAACAGGTGAGAATCCAGCCTCTTCACATGATTTTACTCTCACTAATAAAAGGGgggaaaataaacacttaaaacattaaaacggAGAAATTCACACATAGTTAGGGTAGCCTGAAACGAGAGGTCTGTAAAAGTCTTCTTGGCACGTTTATGGCAAGTGTCGCACCTGGTATTAACAGCTTTTATTAGGAAACCAATTaatatttctgcataattaaATGGTTAACATGATAGGAGtttgtcaaaaatgttttttttttttttttttaactgcaacATATACTGCTTGTGGTTTTAGAGGCACTGAAACTACTTACCTAAAACTATTTTACTTTCAAAAAGTGAATCAAAATGTCTGGAGTAAGTTTACTTTACTATAGTTTCTGACTGACTAGTTTTCTGATTAAATTTACAGTGAACAACTGTCTTGAACAGTATCACAACTTAGCTGCaccataaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_001518718.2 False 920 lncRNA 0.39 2 12432407 12437339
XR_002649938.1 True 1145 lncRNA 0.38 3 12432027 12437339

Neighbor

gene id symbol gene type direction distance location
hnrnpm hnrnpm,hnrpm coding upstream 2181 12420587 ~ 12429846 (+)
march2 march2,LOC106613717,LOC107592682,LOC107655247 coding upstream 12384 12407546 ~ 12419643 (+)
LOC103047600 rab11b,LOC108429533,LOC107599444,LOC107655249,LOC107592688,LOC108280567 coding upstream 26879 12398273 ~ 12405148 (+)
LOC103021640 pip5k1c,LOC108429534 coding upstream 43598 12341614 ~ 12388429 (+)
LOC103046074 hmha1b,LOC108429536,LOC108271042,LOC107655244,LOC107669820 coding upstream 108955 12287917 ~ 12323072 (+)
LOC103025446 nphs2 coding downstream 212412 12649751 ~ 12657114 (+)
nfia nfia,LOC107592693,LOC107599440 coding downstream 422795 12860134 ~ 13094617 (+)
patj patj,LOC107715056,LOC108245549 coding downstream 724723 13162062 ~ 13365321 (+)
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding downstream 1016279 13453618 ~ 13465045 (+)
LOC103033790 LOC103033790,LOC108429474 coding downstream 1115573 13552912 ~ 13559630 (+)
G41961 NA non-coding upstream 103789 12327895 ~ 12328238 (+)
G41954 NA non-coding upstream 146047 12285553 ~ 12285980 (+)
G41906 NA non-coding upstream 310597 12118432 ~ 12121430 (+)
G41842 NA non-coding upstream 710223 11721332 ~ 11721804 (+)
G41841 NA non-coding upstream 711032 11720121 ~ 11720995 (+)
G41975 NA non-coding downstream 17156 12454495 ~ 12456795 (+)
G42070 NA non-coding downstream 197123 12634462 ~ 12634735 (+)
G42091 NA non-coding downstream 250186 12687525 ~ 12692753 (+)
G42103 atpaf1 non-coding downstream 304802 12742141 ~ 12744624 (+)
G42154 NA non-coding downstream 411224 12848563 ~ 12859161 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 91114 12334344 ~ 12340913 (+)
tmem221 tmem221 other upstream 673319 11753887 ~ 11758708 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other upstream 722344 11669447 ~ 11709683 (+)
G41828 LOC108429549,LOC108271147 other upstream 851698 11571226 ~ 11580329 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 2409063 9995709 ~ 10022964 (+)
G42068 NA other downstream 195477 12632816 ~ 12633429 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other downstream 268220 12705559 ~ 12715028 (+)
G42208 ier5 other downstream 1011253 13448592 ~ 13450477 (+)
LOC103032215 NA other downstream 1071681 13509020 ~ 13522257 (+)
LOC103034435 NA other downstream 1179744 13617083 ~ 13622042 (+)

Expression


Co-expression Network