LOC111192488


Basic Information

Item Value
gene id LOC111192488
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 248773 ~ 255441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649912.1
TCTCCCAGAGTGCTATTACCAAAAAATGCCAGAGAGCTCGGGGGTCTGAAGGTGCCGCTATTCAGGAGGCTAAACCTGTTGCTATGGTGCTTCGGTGAGGAGTGTTACTGGTTGAGGTTTCCAAAGGGGACGCTACTGAGAAGCTGGCTCACCAAGTCCCGACCCAGACTGCTGCTACTGATTGCAGGCTTGAAGAGGCCTCAGGTCACCCTCATGAGAAGGAAGAGGATGAAGCGCACAAAAATAGCAAAGGCCACGTAAGCGAACCTGCAGCCGAATGCCACATTTCTCCTGAGTCACTGAGAGTAGCCCTGCCTGCTGTAGAAATGGAAGAAGCCCAAGATACGGAGGAAATAACTTATCAACTGGTGCTGACTCAACGAACTGACCACAAAAGCAAACTGGAGAGAGGATCGGAGTTTGTCGTGAAAGCAAGAGACCCGCCACAGAGGTCCAGACCCCCCGACTAAAACCCGGACCCACTCTCACCCCACACACGGCCATGTGTACATCCCTCCTCTTTCAAAAATACACCTCTGTTATGGTTTCTGACACTACACTGAGTGTGACTgtacattatttttcattttgctgcCAAAAGCCTGGCTGAACGGAGGAGCTCTTTATTCCTGTGTTCTCTGGTCCCAGGTTTTGGTTttgttctgtgtgtgagtggatggatataagaaaaaagaagaaaaaaaaaaaacccattgtAGTTCTTGAGGTAGACAGATGAAGTTATTCCAATAGTTCCAACAACAAAATGGGACTGaacatatttatgaaaataattatacttattttaatataattaatttttcattaattacaaaacatacaaacatattttacacagaaatgATTCCATCACTGATTACTGGTGATAACCattggtttaaataaaaatgtccattttggacaagaaaagaaaaaaacaacaacaaaaaaagcttgCACAGTTTGAAAGTTTACATTTACAAAcatcttattttaatttctgtcCTTTATCCTGtttatattgtcttttttttttacttttagctcACCATGACATACCGCACTTTGACAAAATCTGACACATTTACTTTTCATCTATTCATAGGGTTTACATACATAATGTTTCACCAAATAAacaaggtaacacttta

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0015250 water channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649912.1 True 1151 lncRNA 0.41 3 248773 255441

Neighbor

gene id symbol gene type direction distance location
LOC103034506 kcnh1b,LOC108411957,LOC108270513,LOC107689936,LOC107753489,LOC106564801,LOC105026838 coding upstream 9777 159102 ~ 238996 (+)
LOC103033866 mark1,LOC108271264,LOC108411950 coding upstream 168743 32499 ~ 80030 (+)
ptk7 ptk7,LOC108411955,LOC107698238 coding upstream 224902 506 ~ 23871 (+)
wwtr1 wwtr1 coding downstream 41826 297267 ~ 380545 (+)
LOC103032290 LOC108439433,LOC108271171 coding downstream 161927 417368 ~ 447315 (+)
LOC103032607 LOC108439442 coding downstream 206039 461480 ~ 471204 (+)
cp cp,LOC100533122 coding downstream 223831 479272 ~ 533627 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding downstream 362716 618157 ~ 637895 (+)
G39331 NA non-coding upstream 20516 220144 ~ 228257 (+)
G39327 NA non-coding upstream 65933 174825 ~ 182840 (+)
G39322 NA non-coding upstream 94485 153892 ~ 154288 (+)
G39284 NA non-coding upstream 204555 43855 ~ 44218 (+)
G39346 NA non-coding downstream 39258 294699 ~ 295077 (+)
G39347 NA non-coding downstream 39728 295169 ~ 295569 (+)
G39352 NA non-coding downstream 113702 369143 ~ 369781 (+)
G39349 NA non-coding downstream 155694 411135 ~ 412188 (+)
G39372 NA non-coding downstream 281664 537105 ~ 538332 (+)
commd2 commd2 other downstream 26144 281585 ~ 291022 (+)
plekho2 NA other downstream 667316 922757 ~ 963284 (+)
pdcd7 NA other downstream 783132 1038573 ~ 1045347 (+)
G39619 mrpl21 other downstream 951346 1206787 ~ 1209096 (+)
G39626 NA other downstream 964365 1219806 ~ 1220486 (+)

Expression


Co-expression Network