LOC111192489


Basic Information

Item Value
gene id LOC111192489
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 601856 ~ 603927 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649914.1
CCTGCTACGCTGGTCGCTCTCTTTAGGAACGACGCAGCCACATCCTCAGCGAAGCTGACGTCACCATTTTGCTACTTGAAGAAGACGGGTAATTTCAGCACACCTGTCACACACTTAGACCAGAACTGGACCTACTGCTGAACGCTCAGCAAGCTCATTCAACACTGTCTAAgAAGTAGAAACCAGACGCTGTTGGTCGCtcttcccctcctccctccccgccgcctccaggttggtcccgtttggttgcccgggggttggctccgccctgtcttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649914.1 True 277 lncRNA 0.56 3 601856 603927

Neighbor

gene id symbol gene type direction distance location
cp cp,LOC100533122 coding upstream 68229 479272 ~ 533627 (+)
LOC103032607 LOC108439442 coding upstream 130652 461480 ~ 471204 (+)
LOC103032290 LOC108439433,LOC108271171 coding upstream 154541 417368 ~ 447315 (+)
wwtr1 wwtr1 coding upstream 221311 297267 ~ 380545 (+)
LOC103034506 kcnh1b,LOC108411957,LOC108270513,LOC107689936,LOC107753489,LOC106564801,LOC105026838 coding upstream 362860 159102 ~ 238996 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding downstream 14230 618157 ~ 637895 (+)
immp1l immp1l,LOC107594745 coding downstream 67954 671881 ~ 681622 (+)
ankdd1a ankdd1a,LOC107685207 coding downstream 371010 974937 ~ 1000284 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding downstream 407712 1011639 ~ 1036934 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding downstream 444317 1048244 ~ 1071616 (+)
G39459 NA non-coding upstream 54043 547609 ~ 547813 (+)
G39457 NA non-coding upstream 54504 547081 ~ 547352 (+)
G39452 NA non-coding upstream 62028 539498 ~ 539828 (+)
G39372 NA non-coding upstream 63524 537105 ~ 538332 (+)
G39349 NA non-coding upstream 189668 411135 ~ 412188 (+)
G39504 NA non-coding downstream 108906 712833 ~ 715218 (+)
G39506 NA non-coding downstream 141641 745568 ~ 750620 (+)
G39511 snrpa1,LOC106587741 non-coding downstream 146895 750822 ~ 753837 (+)
G39512 NA non-coding downstream 163411 767338 ~ 767614 (+)
G39529 NA non-coding downstream 275758 879685 ~ 879896 (+)
commd2 commd2 other upstream 310834 281585 ~ 291022 (+)
plekho2 NA other downstream 318830 922757 ~ 963284 (+)
pdcd7 NA other downstream 434646 1038573 ~ 1045347 (+)
G39619 mrpl21 other downstream 602860 1206787 ~ 1209096 (+)
G39626 NA other downstream 615879 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 661930 1265857 ~ 1268385 (+)

Expression


Co-expression Network