Gene
RNA
| Item | Value |
|---|---|
| gene id | G47868 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 11777411 ~ 11777636 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU54472 | True | 226 | lncRNA | 0.32 | 1 | 11777411 | 11777636 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_11753992_11763149 | ODF2, ODF2A | coding | downstream | 14262 | 11753728 ~ 11763149 (-) |
| CI01000006_11715016_11740679 | SPTAN1, SPNA2 | coding | downstream | 36648 | 11714705 ~ 11740763 (-) |
| CI01000006_11672314_11695885 | SPECC1L, SPECC1LB | coding | downstream | 81491 | 11671854 ~ 11695920 (-) |
| CI01000006_11659293_11664444 | ADORA2AB | coding | downstream | 111161 | 11658933 ~ 11666250 (-) |
| CI01000006_11651067_11653761 | SMD3, SNRPD3, SNRPD3L, MGC52856 | coding | downstream | 122987 | 11650363 ~ 11654424 (-) |
| CI01000006_11779363_11781944 | NA | coding | upstream | 1689 | 11779325 ~ 11781988 (-) |
| CI01000006_12195900_12218340 | KIAA1328 | coding | upstream | 418264 | 12195900 ~ 12218340 (-) |
| CI01000006_12223358_12227336 | NA | coding | upstream | 445676 | 12223312 ~ 12227427 (-) |
| CI01000006_12238313_12238815 | NA | coding | upstream | 460677 | 12238313 ~ 12239051 (-) |
| CI01000006_12252567_12267751 | UBAP2, UBAP2A | coding | upstream | 474295 | 12251931 ~ 12267751 (-) |
| G47864 | NA | non-coding | downstream | 4985 | 11772143 ~ 11772426 (-) |
| G47863 | NA | non-coding | downstream | 7169 | 11769938 ~ 11770242 (-) |
| G47861 | NA | non-coding | downstream | 11824 | 11765234 ~ 11765587 (-) |
| G47705 | NA | non-coding | downstream | 69154 | 11704927 ~ 11708257 (-) |
| G47854 | NA | non-coding | downstream | 129246 | 11645527 ~ 11648165 (-) |
| G47869 | NA | non-coding | upstream | 529 | 11778165 ~ 11778517 (-) |
| G47871 | NA | non-coding | upstream | 2374 | 11780010 ~ 11780381 (-) |
| G47873 | NA | non-coding | upstream | 5969 | 11783605 ~ 11783964 (-) |
| G47877 | NA | non-coding | upstream | 11988 | 11789624 ~ 11789823 (-) |
| G47879 | NA | non-coding | upstream | 16314 | 11793950 ~ 11794211 (-) |
| G47658 | NA | other | downstream | 744284 | 11030911 ~ 11033127 (-) |
| CI01000006_10453630_10483241 | NA | other | downstream | 1288976 | 10453613 ~ 10484006 (-) |
| CI01000006_07500281_07507754 | NA | other | downstream | 4266455 | 7500246 ~ 7507976 (-) |
| CI01000006_06974359_06976736 | NA | other | downstream | 4800539 | 6973224 ~ 6976872 (-) |
| CI01000006_12348300_12348961 | GLRX | other | upstream | 556773 | 12347180 ~ 12349383 (-) |
| CI01000006_12569291_12581457 | CELL, CEL.2, CEL.1 | other | upstream | 573123 | 12569205 ~ 12582487 (-) |
