trnar-ucg_1


Basic Information

Item Value
gene id trnar-ucg_1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10292337 ~ 10292409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnar-ucg_1
GGCCTCGTGGCCTAATGGATAAGGCGTCTGACTTCGGATCAGAAGATTGCAGGTTCGAGTCCTGCCGGGGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ucg_1 True 73 tRNA 0.56 1 10292337 10292409

Neighbor

gene id symbol gene type direction distance location
psmd14 psmd14,psde,LOC107563735 coding upstream 2721 10281508 ~ 10289616 (+)
lgsn NA coding upstream 257094 10029657 ~ 10035243 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 312753 9973553 ~ 9979584 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 321589 9968411 ~ 9970748 (+)
LOC103039038 NA coding upstream 324177 9959457 ~ 9968160 (+)
LOC103033216 LOC108428499 coding downstream 426331 10718740 ~ 10730389 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 440885 10733294 ~ 10743346 (+)
trnam-cau_21 NA coding downstream 462800 10755209 ~ 10755281 (+)
LOC103034920 NA coding downstream 463960 10756369 ~ 10861101 (+)
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding downstream 577213 10869622 ~ 10934882 (+)
G41511 LOC108438683,LOC108270806 non-coding upstream 60389 10228851 ~ 10231948 (+)
G41507 NA non-coding upstream 65374 10218352 ~ 10226963 (+)
G41477 NA non-coding upstream 161592 10128552 ~ 10130745 (+)
G41465 NA non-coding upstream 204253 10083990 ~ 10088084 (+)
G41436 NA non-coding upstream 299115 9989714 ~ 9993222 (+)
LOC107197699 NA non-coding downstream 11329 10303738 ~ 10329108 (+)
G41597 NA non-coding downstream 170481 10462890 ~ 10491901 (+)
G41604 LOC108270701,LOC108428498,LOC107737005,LOC107685214 non-coding downstream 243356 10535765 ~ 10585949 (+)
G41682 NA non-coding downstream 572304 10864713 ~ 10864960 (+)
G41684 NA non-coding downstream 574575 10866984 ~ 10867501 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 269373 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 1356851 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1529545 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 1768024 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2465423 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 1278817 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1377038 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1461478 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2041935 12334344 ~ 12340913 (+)
G42068 NA other downstream 2340407 12632816 ~ 12633429 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnar-ucg-2 NA coding NC_048566.1 CM023220.2 81584973 ~ 81585045 (-)
eurasian perch (Perca fluviatilis) trnar-ucg_15 NA coding NC_053119.1 CM020916.1 23937664 ~ 23937736 (+)
striped catfish (Pangasianodon hypophthalmus) trnar-ucg_10 NA coding NC_047619.1 CM018565.1 7131324 ~ 7131396 (+)
tiger barb (Puntius tetrazona) trnar-ucg_119 NA coding NC_056723.1 CM032092.1 4750758 ~ 4750830 (+)
tiger barb (Puntius tetrazona) trnal-aag_25 NA non-coding NC_056702.1 CM032071.1 20210556 ~ 20210638 (-)
mexican tetra (Astyanax mexicanus) trnar-ucg_10 NA coding NC_035917.1 CM008320.1 16578980 ~ 16579052 (-)