LOC103045392


Basic Information

Item Value
gene id LOC103045392
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28999502 ~ 29025114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC103045392
CTCCGTTGCTTAAAGTGAGGATCAGTCACACTGCTCATCATAAGGATGTGTCTGGCATGTGGACTGTGTGTAttctacattttatatttaggtGCAGAATCTGTGACGGTTCAACAAAAGACCTCGATACTGTTCGCCAAAGAAACGGACACCGCAACCATCGAGTGCAGCCACGATGACAAAAGCTATTACACCACGCTGTGGTATCAGCAGAAGAGGGACAGCACGGCTATGGATCTGATTGGCTTCAGTGTTAGCACTAATAAACCAAACTATGAAGACGGGTTTGATAAAAGGTTCAAACTGAGCAAAGACGGAGATCTGAAAGGAGAACTGACCATCTCGAATCTTCTTCAGTCTGATTCTGCAGTGTATTACTGTGCTGTAAGCAAGCACAGTGCTGCATGATCATATGAGTGCTGTATTAAAACCTCACCTCaccaaacacacagcagcacacacactcaggtaTGATGAAAGAGGTGTTT
>TU113560
ggtGCAGAATCTGTGACGGTTCAACAAAAGACCTCGATACTGTTCGCCAAAGAAACGGACACCGCAACCATCGAGTGCAGCCACGATGACAAAAGCTATTACACCACGCTGTGGTATCAGCAGAAGAGGGACAGCACGGCTATGGATCTGATTGGCTTCAGTGTTAGCACTAATAAACCAAACTATGAAGACGGGTTTGATAAAAGGTTCAAACTGAGCAAAGACGGAGATCTGAAAGGAGAACTGACCATCTCGAATCTTCTTCAGTCTGATTCTGCAGTGTATTACTGTGCTGTAAGCAAGCACAGTGCTGCATGATCATATGAGTGCTGTATTAAAACCTCACCTCaccaaacacacagcagcacacacactcaggAAGAACAAACTGTGTTAAATTTGAACAGCCGCCATCTCTTTTTGCCAAAGAACATGACAGTGTAACAATCAAGTGCAGCCACGATGACAATAGCTTGTTATATATGCTGTGGTATCAGCGAAAGAGTGACAGTACAAATATGAACTTTATTGGCTACCGCTACATCTCAGGTGATGCTGTAAAAGAAGAGGGTTTTAAGGAACGATTTGATCtgaagagagatggagatgtAAAAGGAGATCTGATCATCTCTAAACTCGTCTCGTCTGATTCTGCTGTTTATTACTGTGCAGCAAAAGAACACAGTGCTGCAGATTAATACAACCACCTTACTAAAACCCTCAACCTCAAACACACAGGAGCACAAACTGACTGTAGCTTCAAACTGTAGCTTCATGCTGCATTTCTGCTGTATTATCTGATTATTATGCCATCTGCT
>TU113562
TTAAGCTGTGATTCTGAAGGATGTGTGGTGTTTGGggactttttgtgtgttttattgtctttataGgAAGAACAAACTGTGTTAAATTTGAACAGCCGCCATCTCTTTTTGCCAAAGAACATGACAGTGTAACAATCAAGTGCAGCCACGATGACAATAGCTTGTTATATATGCTGTGGTATCAGCGAAAGAGTGACAGTACAAATATGAACTTTATTGGCTACCGCTACATCTCAGGTGATGCTGTAAAAGAAGAGGGTTTTAAGGAACGATTTGATCtgaagagagatggagatgtAAAAGGAGATCTGATCATCTCTAAACTCGTCTCGTCTGATTCTGCTGTTTATTACTGTGCAGCCAGTCTGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC103045392 False 488 V_segment 0.44 2 28999502 29000106
TU113560 True 818 lncRNA 0.43 3 28999709 29009835
TU113562 False 371 TUCP 0.40 4 29004094 29025114

Neighbor

gene id symbol gene type direction distance location
LOC111193134 ltbp2 coding upstream 30474 28854283 ~ 28969028 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding upstream 198263 28775149 ~ 28801239 (+)
LOC103029222 NA coding upstream 251074 28739241 ~ 28748428 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 323839 28662092 ~ 28675663 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 439408 28428946 ~ 28560094 (+)
adi1 adi1,LOC107753353 coding downstream 162461 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 239939 29265053 ~ 29324443 (+)
LOC103038403 myt1l coding downstream 389398 29414512 ~ 29625594 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding downstream 601521 29626635 ~ 29716871 (+)
LOC103028385 LOC103028385 coding downstream 709499 29734613 ~ 29737276 (+)
G84300 NA non-coding upstream 19724 28979473 ~ 28979778 (+)
G84298 NA non-coding upstream 73326 28925610 ~ 28926176 (+)
G84296 NA non-coding upstream 174226 28823824 ~ 28825276 (+)
G84294 NA non-coding upstream 196181 28803114 ~ 28803321 (+)
G84291 fcf1,LOC107704360 non-coding upstream 226667 28770168 ~ 28772835 (+)
G84313 NA non-coding downstream 2174 29027288 ~ 29027823 (+)
G84311 NA non-coding downstream 21629 29046743 ~ 29071659 (+)
G84402 NA non-coding downstream 78617 29103731 ~ 29103978 (+)
G84403 NA non-coding downstream 85498 29110612 ~ 29112649 (+)
G84412 LOC107589761 non-coding downstream 135280 29160394 ~ 29162367 (+)
LOC107197841 NA other upstream 28663 28970264 ~ 28970839 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 1167918 27824256 ~ 27831584 (+)
fam98b NA other upstream 1177291 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 2222014 26727823 ~ 26777488 (+)
spata7 NA other upstream 2600235 26392890 ~ 26399267 (+)
LOC111193240 NA other downstream 15865 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 18103 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 46777 29071891 ~ 29078898 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 942436 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 1581643 30606757 ~ 30615062 (+)

Expression


Co-expression Network