LOC107197844


Basic Information

Item Value
gene id LOC107197844
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29071891 ~ 29078898 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC107197844
ATGTCAAGGTCagtaatccaggtccagaagGCATCAATAGCTTTAAGCTGTTTGAGTTTATGTCAGGCTTTGAGTCATTGTGCTAGCTTCTCTGAACTCAAATTTGGCCCAGGGACCACGCTAACAGTTCTAGatcCCAATATACCCATAACCGAACCCACAGTCACTGTGCTGCGACCTTCACCAAGAGAGTACTGCAACAGTACAACAACGAACGTGACTTTGGTGTGTCTGGCCAAGAAGTTCTATCCAAACCACGTTAATTTTTCCTGGCAGATAAACGGGAATGAAATAGCCGATGGAGTTGCTACAGACCTTTACGCTGTACAAGATCCAGAAACAAAGTTCTACAGCATGTCCAGCAGACTGCTCGTGGAGAAAACAGTTTGGGACGATCTCATGAATAACTTCACTTGCATTGTTCATTTTCACAACAGACAAGAAATAACAAATTGTAATGATACCATAACAAAACCAAAAGactCTATGCCAGcaAGAAAACtggcagcagttcagtttggctACTCGATGTTTCTTAGTAAGAGTGTGGCATATGCCATGTTTTTGGCAATTCTGGTGTGGAAATTCAAGCCTGCAAAGGAGAAGAAGCTGCTAGAAGAAAACTAAAGCAGTTTTGTCAACTGAAGCCTCCAaacagatgattaaaaaaatagcctGTGGAGAAACGAAGACAAATCAAGCACTGCCACAAAACACGGCATTACACCTGTATGTGTTTAAATCTGCattttatgtaatgttaatgGATACAAgcttaagataaaaaaatgctaattacATTTAGATGATTGTCATTTTTCCCTGCggaaaaatccagctcaagaccatCTTCTGCAAGTAGCTGGTTTTGTATGAGATGGTCTTTGATGGTTAAAGGTGATTTTAAAAGCTGGTCATCCCGCTAAAACATAAGCTTGACCTGTATAGTGAATGTTGCATCTTGCTGGTCttgcttggtcttgctggtcatactggttatctagcttAACCAGATTAAACTGAACATGCTAGTGTTTTCAGCAGGGCTGTTATGCTTTGTAAATTTGCTCTGAGAAGTTTTAAATATATCTTTGCTtttaacattctttttttatatcctACAATATCATGTACattgaaacaaataaaatgattaattgtactataaataaactgtgTTAAA
>TU113577
tttttgttgttgttttttcttttcagactCTATGCCAGcaAGAAAACtggcagcagttcagtttggctACTCGATGTTTCTTAGTAAGAGTGTGGCATATGCCATGTTTTTGGCAATTCTGGTGTGGAAATTCAAGCCTGCAAAGGAGAAGAAGCTGCTAGAAGAAAACTAAAGCAGTTTTGTCAACTGAAGCCTCCAaacagatgattaaaaaaatagcctGTGGAGAAACGAAGACAAATCAAGCACTGCCACAAAACACGGCATTACACCTGTATGTGTTTAAATCTGCattttatgtaatgttaatgGATACAAgcttaagataaaaaaatgctaattacATTTAGATGATTGTCATTTTTCCCTGCggaaaaatccagctcaagaccatCTTCTGCAAGTAGCTGGTTTTGTATGAGATGGTCTTTGATGGTTAAAGGTGATTTTAAAAGCTGGTCATCCCGCTAAAACATAAGCTTGACCTGTATAGTGAATGTTGCATCTTGCTGGTCttgcttggtcttgctggtcatactggttatctagcttAACCAGATTAAACTGAACATGCTAGTGTTTTCAGCAGGGCTGTTATGCTTTGTAAATTTGCTCTGAGAAGTTTTAAATATATCTTTGCTtttaacattctttttttatatcctA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
LOC107197844 True 1183 C_region 0.39 6 29071891 29078898
TU113577 False 666 lncRNA 0.37 3 29077116 29078836

Neighbor

gene id symbol gene type direction distance location
LOC111193134 ltbp2 coding upstream 102863 28854283 ~ 28969028 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding upstream 270652 28775149 ~ 28801239 (+)
LOC103029222 NA coding upstream 323463 28739241 ~ 28748428 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 396228 28662092 ~ 28675663 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 511797 28428946 ~ 28560094 (+)
adi1 adi1,LOC107753353 coding downstream 108677 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 186155 29265053 ~ 29324443 (+)
LOC103038403 myt1l coding downstream 335614 29414512 ~ 29625594 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding downstream 547737 29626635 ~ 29716871 (+)
LOC103028385 LOC103028385 coding downstream 655715 29734613 ~ 29737276 (+)
G84311 NA non-coding upstream 232 29046743 ~ 29071659 (+)
G84313 NA non-coding upstream 44068 29027288 ~ 29027823 (+)
G84307 NA non-coding upstream 53555 29012591 ~ 29018336 (+)
G84308 NA non-coding upstream 56434 29015017 ~ 29015457 (+)
G84300 NA non-coding upstream 92113 28979473 ~ 28979778 (+)
G84402 NA non-coding downstream 24833 29103731 ~ 29103978 (+)
G84403 NA non-coding downstream 31714 29110612 ~ 29112649 (+)
G84412 LOC107589761 non-coding downstream 81496 29160394 ~ 29162367 (+)
G84414 LOC108269999,LOC108423477,LOC107570253,LOC107684238,LOC107753355 non-coding downstream 93908 29172806 ~ 29175987 (+)
G84415 LOC108423477,LOC108269999,LOC107723284,LOC107589779 non-coding downstream 100971 29179869 ~ 29185938 (+)
LOC111193135 NA other upstream 28152 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 30284 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 46777 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 101052 28970264 ~ 28970839 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 1240307 27824256 ~ 27831584 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 888652 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 1527859 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 2376086 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 2670805 31749703 ~ 31805403 (+)
G85189 NA other downstream 2744688 31823586 ~ 31824388 (+)

Expression


Co-expression Network