LOC111193135


Basic Information

Item Value
gene id LOC111193135
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29043217 ~ 29043739 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111193135
ATGACGCTGGTCTGTGTTGGGTTTGTGTTGATCATCTTTATGAAATCTACAGAAGGATTATCTATAACTCAGGGTCCTACTTTGATCATCAAGGACTATGGCGACTCTGTGAAAGCAGAATGCTGGCATAATGACAgcacttattattatatgtactgGTATAAACAGGGCATTCTGGGTCAGATTGAGCTTATTGCTCTGTCTATTGGGAAGGGAATGTCTCAGATAGCAGCACCATTCAATGAGTCGAAATACTCCATGACCCGTGTGGAGGTGAAGCACGGGATTCTAGAGATCCAGAAGCTGGAGGCTGAAGATTCAGCTGTGTACTTCTGTGCAGCGAGTAGAGCACAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111193135 True 357 V_segment 0.44 2 29043217 29043739

Neighbor

gene id symbol gene type direction distance location
LOC111193134 ltbp2 coding upstream 74189 28854283 ~ 28969028 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding upstream 241978 28775149 ~ 28801239 (+)
LOC103029222 NA coding upstream 294789 28739241 ~ 28748428 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 367554 28662092 ~ 28675663 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 483123 28428946 ~ 28560094 (+)
adi1 adi1,LOC107753353 coding downstream 143836 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 221314 29265053 ~ 29324443 (+)
LOC103038403 myt1l coding downstream 370773 29414512 ~ 29625594 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding downstream 582896 29626635 ~ 29716871 (+)
LOC103028385 LOC103028385 coding downstream 690874 29734613 ~ 29737276 (+)
G84313 NA non-coding upstream 15394 29027288 ~ 29027823 (+)
G84307 NA non-coding upstream 24881 29012591 ~ 29018336 (+)
G84308 NA non-coding upstream 27760 29015017 ~ 29015457 (+)
G84300 NA non-coding upstream 63439 28979473 ~ 28979778 (+)
G84298 NA non-coding upstream 117041 28925610 ~ 28926176 (+)
G84311 NA non-coding downstream 3004 29046743 ~ 29071659 (+)
G84402 NA non-coding downstream 59992 29103731 ~ 29103978 (+)
G84403 NA non-coding downstream 66873 29110612 ~ 29112649 (+)
G84412 LOC107589761 non-coding downstream 116655 29160394 ~ 29162367 (+)
G84414 LOC108269999,LOC108423477,LOC107570253,LOC107684238,LOC107753355 non-coding downstream 129067 29172806 ~ 29175987 (+)
LOC111193240 NA other upstream 1610 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 18103 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 72378 28970264 ~ 28970839 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 1211633 27824256 ~ 27831584 (+)
fam98b NA other upstream 1221006 27815805 ~ 27822211 (+)
LOC107197844 NA other downstream 28152 29071891 ~ 29078898 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 923811 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 1563018 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 2411245 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 2705964 31749703 ~ 31805403 (+)

Expression


Co-expression Network