LOC111193240


Basic Information

Item Value
gene id LOC111193240
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29040979 ~ 29041607 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111193240
CTTCAGCTCTGTGTTGGACAGAATGagatttatttttgtcattttagctTTACTTCTAACAATACATGCATCCAGCGGACTCAACATTATTCAGAAGCCTGATATATTCGCCAACCAGGGTTCCTCTGTGATTCTACACTGTGAGCAAGATAATGCAGACTACTACAGGATGTCCTGGTACCGACAAACAAGTGATAATCACACTCTAGAACTGCTAGCTTTTTCTATGGTTCAAGGTAGTCAAAGCATTGAGCCTCCGTTTGATAAAGCTGATAAATACATAATGACCCGTCCAGAGGTGCTGAAGGGAACGCTGCAGATAGAGAAGCTGGAGGCTGCAGACTCTGCTTTATATTACTGTGCTACAAGTCTGACACAGTAACTCAGATCAGTTTAACAGTCAGTCATTAACCTCTACAGTAGAGTAATGTGTGATGGTGAGGTTCACCTGGACTCGTGGTTCATACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111193240 True 468 V_segment 0.42 2 29040979 29041607

Neighbor

gene id symbol gene type direction distance location
LOC111193134 ltbp2 coding upstream 71951 28854283 ~ 28969028 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding upstream 239740 28775149 ~ 28801239 (+)
LOC103029222 NA coding upstream 292551 28739241 ~ 28748428 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 365316 28662092 ~ 28675663 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 480885 28428946 ~ 28560094 (+)
adi1 adi1,LOC107753353 coding downstream 145968 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 223446 29265053 ~ 29324443 (+)
LOC103038403 myt1l coding downstream 372905 29414512 ~ 29625594 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding downstream 585028 29626635 ~ 29716871 (+)
LOC103028385 LOC103028385 coding downstream 693006 29734613 ~ 29737276 (+)
G84313 NA non-coding upstream 13156 29027288 ~ 29027823 (+)
G84307 NA non-coding upstream 22643 29012591 ~ 29018336 (+)
G84308 NA non-coding upstream 25522 29015017 ~ 29015457 (+)
G84300 NA non-coding upstream 61201 28979473 ~ 28979778 (+)
G84298 NA non-coding upstream 114803 28925610 ~ 28926176 (+)
G84311 NA non-coding downstream 5136 29046743 ~ 29071659 (+)
G84402 NA non-coding downstream 62124 29103731 ~ 29103978 (+)
G84403 NA non-coding downstream 69005 29110612 ~ 29112649 (+)
G84412 LOC107589761 non-coding downstream 118787 29160394 ~ 29162367 (+)
G84414 LOC108269999,LOC108423477,LOC107570253,LOC107684238,LOC107753355 non-coding downstream 131199 29172806 ~ 29175987 (+)
LOC103045392 NA other upstream 15865 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 70140 28970264 ~ 28970839 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 1209395 27824256 ~ 27831584 (+)
fam98b NA other upstream 1218768 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 2263491 26727823 ~ 26777488 (+)
LOC111193135 NA other downstream 1610 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 30284 29071891 ~ 29078898 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 925943 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 1565150 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 2413377 31454984 ~ 31469556 (+)

Expression


Co-expression Network