G47390


Basic Information

Item Value
gene id G47390
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11790211 ~ 11790433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53910
CTTACACTGGGAATCTTGAACCCTTTTAATGAATATGGTTTTAGCATAGAAAATATTGTTGGATTTAATAGAATTCCATGACGGCACACCGGTTATCTGCTTCACAGCAGATGTAGCAACACCCGGACACTTGATGAACACTTGAAAGGGAAGCCGGCCTCAGAAGTGGGTTCTGCTAGCGCCACTGATGGGCGACTTCAAAGACACCGCTACACAACATGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53910 True 223 lncRNA 0.45 1 11790211 11790433

Neighbor

gene id symbol gene type direction distance location
CI01000006_11751944_11752854 NA coding upstream 36993 11750854 ~ 11753218 (+)
CI01000006_11704767_11714559 WDR34 coding upstream 75550 11704767 ~ 11714661 (+)
CI01000006_11546432_11575289 NSMFA coding upstream 214735 11546432 ~ 11575476 (+)
CI01000006_11476139_11503761 PNPLA7 coding upstream 285613 11476139 ~ 11504598 (+)
CI01000006_11469982_11473164 CLIC4, CLIC3 coding upstream 316584 11469129 ~ 11473627 (+)
CI01000006_11888383_11923287 NA coding downstream 97759 11888192 ~ 11924390 (+)
CI01000006_12092807_12095434 NA coding downstream 301956 12092389 ~ 12095668 (+)
CI01000006_12176092_12189504 NA coding downstream 385659 12176092 ~ 12189828 (+)
CI01000006_12219317_12222975 TPGS2 coding downstream 428884 12219317 ~ 12223117 (+)
CI01000006_12230746_12235389 NA coding downstream 439114 12229547 ~ 12235525 (+)
G47333 NA non-coding upstream 70131 11714686 ~ 11720080 (+)
G47368 NA non-coding upstream 105236 11684635 ~ 11684975 (+)
G47362 NA non-coding upstream 121622 11668374 ~ 11668589 (+)
G47315 NA non-coding upstream 263195 11526788 ~ 11527016 (+)
CI01000006_11436920_11440304 NA non-coding upstream 342871 11436920 ~ 11440304 (+)
G47912 NA non-coding downstream 43799 11834232 ~ 11834488 (+)
G47916 NA non-coding downstream 47319 11837752 ~ 11838191 (+)
G47948 NA non-coding downstream 86382 11876815 ~ 11877051 (+)
G48067 NA non-coding downstream 191423 11981856 ~ 11982106 (+)
G48146 NA non-coding downstream 214823 12005256 ~ 12005503 (+)
G47318 NA other upstream 151959 11624267 ~ 11638252 (+)
G47159 NA other upstream 268508 11416229 ~ 11521703 (+)
G47145 NA other upstream 1278405 10485358 ~ 10511806 (+)
G46652 NA other upstream 1630960 10156579 ~ 10159251 (+)
G45416 NA other upstream 2955514 8818814 ~ 8834697 (+)
G48094 NA other downstream 487187 12277620 ~ 12279541 (+)
G48081 NA other downstream 586573 12377006 ~ 12384827 (+)

Expression


Co-expression Network