G77035


Basic Information

Item Value
gene id G77035
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 407983 ~ 501997 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU103866
TGATTGGATTATTTGTAGCATGAATGTAAACAGGGAGTTTACTCAGACTATTGGGGAAAGTGTTCATAtccagctctgcaaaaaataaagaaatcacttcagtttctgattcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattctaaataaaaatattctcatttagagcatttatttacagaaaatgagaaatggctgaaataacaaaaaaaaagatgcagagctttcagacctcaaataatacaaagaaaacaacaagttcatattcataaagttttaagagttcagaaataatcaatatttggtggaataatcctggtttttaatcacagttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtttgatggcttgtgatcatccatcaatcaaagaaactcataacagtcagatttcagtctgattaatatttgatgtaaatgcatgtggttTAAATCTTACTATACAATCCAGATACTtatcaaatgaaataaagtccaggtgtgaacagggtctgagtttctgtggtgttcagCATTAAGTGTAAGGCTATGTTCAGATTTGTTTCTTAAAtcagatgagatgagatgagtgtACACACTGTAATTTGGTAGTAATtgatcagattggatttgtTTGGCTTTTCTGTACAATCTTATTTTTGATGATCTGTATATTTACTGATTATAATCTCATTTCAAACCACTTCCAAATCTGGTTTAGATCAAAAATCAGTACAGATACAGTTCAGATGTATACAATTCAGATTTGGGCCGACAGTCTGAACATAGCCGAAGGTTCTGGGAagagatttttatatttatctgtaTTTCTATCAAAGTATTTTTCAAATCGGACAAATTTTGAATGTTGAAACACTATGATTTCAGGGATCTGGTGAAAGTATTTCTTGTCAcagaatgtaaatattttaaactttctcataaaaatcatgaaaaatgaAACATTGCTTTCTGTTTTATAGA
>TU103867
tgttttattatataaactacagacaacatttctcccaaataaaaaaaaaataaaaaattaagagcatttatttgcagaaaatctaattagaaatcaatatttggtggaataaccctggttggcatcatgttctcctccgtcagtcttacacactgcttttggataactttatgctgatttactcctggtgcaaatattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcaatcaaagaaactcataacagtcagatttcagtctgattaatatttgatgtaaatgcatgtggttTAAATCTTACTATACAATCCAGATACTtatcaaatgaaataaagtccaggtgtgaacagggtctgagtttctgtggtgttcagCATTAAGTGTAAGGCTATGTTCAGATTTGTTTCTTAAAtcagatgagatgagatgagtgtACACACTGTAATTTGGTAGTAATtgatcagattggatttgtTTGGCTTTTCTGTACAATCTTATTTTTGATGATCTGTATATTTACTGATTATAATCTCATTTCAAACCACTTCCAAATCTGGTTTAGATCAAAAATCAGTACAGATACAGTTCAGATGTATACAATTCAGATTTGGGCCGACAGTCTGAACATAGCCGAAGGTTCTGGGAagagatttttatatttatctgtaTTTCTATCAAAGTATTTTTCAAATCGGACAAATTTTGAATGTTGAAACACTATGATTTCAGGGATCTGGTGAAAGTATTTCTTGTCAcagaatgtaaatattttaaactttctcataaaaatcatgaaaaatgaAACATTGCTTTCTGTTTTATAGA
>TU103868
cttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtttgatggcttgtgatcatccatcaatcaaagaaactcataacagtcagatttcagtctgattaatatttgatgtaaatgcatgtggttTAAATCTTACTATACAATCCAGATACTtatcaaatgaaataaagtccaggtgtgaacagggtctgagtttctgtggtgttcagCATTAAGTGTAAGGCTATGTTCAGATTTGTTTCTTAAAtcagatgagatgagatgagtgtACACACTGTAATTTGGTAGTAATtgatcagattggatttgtTTGGCTTTTCTGTACAATCTTATTTTTGATGATCTGTATATTTACTGATTATAATCTCATTTCAAACCACTTCCAAATCTGGTTTAGATCAAAAATCAGTACAGATACAGTTCAGATGTATACAATTCAGATTTGGGCCGACAGTCTGAACATAGCCGAAGGTTCTGGGAagagatttttatatttatctgtaTTTCTATCAAAGTATTTTTCAAATCGGACAAATTTTGAATGTTGAAACACTATGATTTCAGGGATCTGGTGAAAGTATTTCTTGTCAcagaatgtaaatattttaaactttctcataaaaatcatgaaaaatgaAACATTGCTTTCTGTTTTATAGA
>TU103869
aacaaaaaaaaaaacaatatttggtggaataatcctggtttttaatcacagttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtttgatggcttgtgatcatccatcaatcaaagaaactcataacagtcagatttcagtctgattaatatttgatgtaaatgcatgtggttTAAATCTTACTATACAATCCAGATACTtatcaaatgaaataaagtccaggtgtgaacagggtctgagtttctgtggtgttcagCATTAAGTGTAAGGCTATGTTCAGATTTGTTTCTTAAAtcagatgagatgagatgagtgtACACACTGTAATTTGGTAGTAATtgatcagattggatttgtTTGGCTTTTCTGTACAATCTTATTTTTGATGATCTGTATATTTACTGATTATAATCTCATTTCAAACCACTTCCAAATCTGGTTTAGATCAAAAATCAGTACAGATACAGTTCAGATGTATACAATTCAGATTTGGGCCGACAGTCTGAACATAGCCGAAGGTTCTGGGAagagatttttatatttatctgtaTTTCTATCAAAGTATTTTTCAAATCGGACAAATTTTGAATGTTGAAACACTATGATTTCAGGGATCTGGTGAAAGTATTTCTTGTCAcagaatgtaaatattttaaactttctcataaaaatcatgaaaaatgaAACATTGCTTTCTGTTTTATAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103866 True 1133 lncRNA 0.31 2 488757 501997
TU103867 False 841 lncRNA 0.32 2 501125 501997
TU103868 False 683 lncRNA 0.32 2 407983 501997
TU103869 False 787 lncRNA 0.32 3 468378 501997

Neighbor

gene id symbol gene type direction distance location
LOC103044274 LOC108425589,LOC108269650,LOC107697665,LOC107719518,LOC107563387 coding upstream 38980 359136 ~ 369003 (+)
ccdc32 cunh15orf57,LOC103043985 coding upstream 53003 352153 ~ 354980 (+)
disp2 disp2 coding upstream 70036 321307 ~ 337947 (+)
degs2 degs2,LOC107697737,LOC107733197,LOC107674056 coding upstream 218849 178406 ~ 189134 (+)
tpp1 tpp1 coding upstream 234114 163028 ~ 173869 (+)
LOC103041189 si:dkey-13p1.4,LOC103041189,LOC108436737,LOC107697687,LOC107674053,LOC107733120,LOC107719509,LOC108269552 coding downstream 144902 646899 ~ 651689 (+)
adprhl2 adprhl2,LOC107697751,LOC107674064,LOC107594801,LOC107719508 coding downstream 159542 661539 ~ 666304 (+)
cinp NA coding downstream 165208 667205 ~ 671575 (+)
nubpl nubpl,LOC107719449,LOC107697759,LOC107561549,LOC107733195,LOC107674123 coding downstream 252242 754239 ~ 761723 (+)
arhgap5 arhgap5,LOC107594795,LOC107733129,LOC107719447,LOC107561551 coding downstream 274127 776124 ~ 814690 (+)
G77033 NA non-coding upstream 24699 383045 ~ 383284 (+)
G76976 NA non-coding upstream 49870 238265 ~ 358113 (+)
G77008 NA non-coding upstream 155452 252010 ~ 252531 (+)
G76995 NA non-coding upstream 175861 222531 ~ 232122 (+)
G76992 NA non-coding upstream 204391 197871 ~ 203592 (+)
G77054 NA non-coding downstream 14629 516626 ~ 529843 (+)
G77060 NA non-coding downstream 20313 522310 ~ 534604 (+)
G77135 NA non-coding downstream 58906 560903 ~ 561171 (+)
G77137 NA non-coding downstream 64368 566365 ~ 566655 (+)
G77148 NA non-coding downstream 112014 614011 ~ 621295 (+)
ldah ldah other upstream 274680 84719 ~ 133303 (+)
G77059 NA other downstream 17636 519633 ~ 520590 (+)
G77154 NA other downstream 129717 631714 ~ 632372 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other downstream 381300 883297 ~ 935678 (+)
G77212 NA other downstream 503132 1005129 ~ 1008842 (+)
G77410 NA other downstream 982673 1484670 ~ 1485050 (+)

Expression


Co-expression Network