G77048 (ivd,LOC107719458,LOC107733087)


Basic Information

Item Value
gene id G77048
gene name ivd,LOC107719458,LOC107733087
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 459268 ~ 465132 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU103883
TGTTAAATCTCATTTTATCAGATTATAGAGTAGTatcctgtatttaaggcattGAGGAGCAGCTTGGTTGAGGTTTTATTTGAACATGGAGTTGAAAGCTCTGCCGATGACCATCCTCCGGACCTCGCTGGTGCCGGCGCCGATCTCGTACAGCTTAGCGTCTCTGAGGAATCGGCCCATTGGGTAATCATTAATATAACCGTTTCCACCCAGGCACTGAATTCCGTCCAGGGCTACTTGAGTGGCGTTTTCAGCACAATAAAGGATTACTCCAGCACAGTCCTTGGCGCTGAAGTGGCCTTTGTCACAAGCGCGTGCGACGTTGTACACATACTGCCGGCAGGAGCTCAGCCGGGTGTACATATCAGCCATTTTTGCCTGCATCAGCTGGAACAGGCCGATCTTCTGCCCGAACGCTTCTCGAACGTGCAGGTAGGGAATAGCGTGGTCCAGCACAGCCTGCATAataccTATTGGTCCAGCTGAGAGCACCAGCCTCTCCAGGTCTAATCCACTCATCAGCACGTACACCCCCTCATTCCCAACTTATCCAGCTTCTGCGCTGTGCTAAATCCCGGCGTCCCCTTTTCCACGATGAAGGCAGAGATGCCTCGGGCTGCCGCCTCGGGGCTCGTCTTCGCATAAACGATGAGCACGTCGGCATCTGGTCCGTTCGTGATCCAGAACTTATTACCATTCAGCACATAGTGGTCACCCTCGTTCCTCGCCGTGAGCTTCATGGACACGACATCAGATCCAGAGTTGGGTTCACTCATGGCCAAAGCACCGACGTGTTCTCCTGTAATcaaCTTGGGCATGtacttctctttctgtttcgtGTTTCCATGTCGCACCAGCTGATTAATACAGAGATTAGAATGAGCTCCATAACTGAGAGCAATCGCCGCAGACGCCCGAGACATCTCCTCCATCACGATCACATGATCCAGATAGCCCAATCCCGTGCCTCCGTACTCCACTG

Function

symbol description
ivd Predicted to enable isovaleryl-CoA dehydrogenase activity. Predicted to be involved in leucine catabolic process. Is expressed in alar plate midbrain region; digestive system; immature eye; musculature system; and optic tectum. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and isovaleric acidemia. Orthologous to human IVD (isovaleryl-CoA dehydrogenase).

NR:

description
PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103883 True 982 lncRNA 0.52 9 459268 465132

Neighbor

gene id symbol gene type direction distance location
LOC103044274 LOC108425589,LOC108269650,LOC107697665,LOC107719518,LOC107563387 coding upstream 90265 359136 ~ 369003 (+)
ccdc32 cunh15orf57,LOC103043985 coding upstream 104288 352153 ~ 354980 (+)
disp2 disp2 coding upstream 121321 321307 ~ 337947 (+)
degs2 degs2,LOC107697737,LOC107733197,LOC107674056 coding upstream 270134 178406 ~ 189134 (+)
tpp1 tpp1 coding upstream 285399 163028 ~ 173869 (+)
itpka itpka coding downstream 5381 470513 ~ 495668 (+)
LOC103041189 si:dkey-13p1.4,LOC103041189,LOC108436737,LOC107697687,LOC107674053,LOC107733120,LOC107719509,LOC108269552 coding downstream 181767 646899 ~ 651689 (+)
adprhl2 adprhl2,LOC107697751,LOC107674064,LOC107594801,LOC107719508 coding downstream 196407 661539 ~ 666304 (+)
cinp NA coding downstream 202073 667205 ~ 671575 (+)
nubpl nubpl,LOC107719449,LOC107697759,LOC107561549,LOC107733195,LOC107674123 coding downstream 289107 754239 ~ 761723 (+)
G77033 NA non-coding upstream 75984 383045 ~ 383284 (+)
G76976 NA non-coding upstream 101155 238265 ~ 358113 (+)
G77008 NA non-coding upstream 206737 252010 ~ 252531 (+)
G76995 NA non-coding upstream 227146 222531 ~ 232122 (+)
G76992 NA non-coding upstream 255676 197871 ~ 203592 (+)
G77054 NA non-coding downstream 51494 516626 ~ 529843 (+)
G77060 NA non-coding downstream 57178 522310 ~ 534604 (+)
G77135 NA non-coding downstream 95771 560903 ~ 561171 (+)
G77137 NA non-coding downstream 101233 566365 ~ 566655 (+)
G77148 NA non-coding downstream 148879 614011 ~ 621295 (+)
ldah ldah other upstream 325965 84719 ~ 133303 (+)
G77059 NA other downstream 54501 519633 ~ 520590 (+)
G77154 NA other downstream 166582 631714 ~ 632372 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other downstream 418165 883297 ~ 935678 (+)
G77212 NA other downstream 539997 1005129 ~ 1008842 (+)
G77410 NA other downstream 1019538 1484670 ~ 1485050 (+)

Expression


Co-expression Network