G77198


Basic Information

Item Value
gene id G77198
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 936248 ~ 937233 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104104
CGTCTTTTTCAGGAGTTCCTacaatgtagattaatattaaaacagttCCAATCCATATTTTTGCAAGAACTACTCTAACTAGGTAAAAGAAATTATGAAGGtcagtcattttttttcattaggatgaaactggcactcatcaggattgcTCCAGGAAAGTAAAAGCGAGAGTTATCTCTATTGtattgtacaggataagtttattagagttatcagcctcagaaatccCCAAAGTTCCCCaaataagagcatctaaatactGCACATTTTTcaggtatttttatttgtttaacacttttaagttactacatcaTTTGTATGTGATCTATATTAATGTCAATATATCCCAATACATTATAGCCTATtgcataaattatataatttaataaaataatagcaatatatataaatatttcaccTACCCTAATATGAAGAGTTACCATTTCCGAACAATGACTGGTTCTTTAAATAATCACGTTTAAAGGCTTTTTAAAGGTTTTGCACCAATTAAACATTATGACTCAAACTGTAAAAGCAAAGCAAGAAAATCAAGAACCATTTAGGATCCCGTACTTTAAAgagtgcactgcaaaaaaacatacaaaaaaaaaaacatacatacaagctagatgaacttaaaaaaaaaaaaaatcatgcattTAGTTTAGAATTAGAGTGGAGTTGCACAGTGTGGACGAGCTGTTACTGTAGCATAACGAAACACAGATGCATCGCTATACCTTTGGGAAAGTGCAATTGATTTATATTGtgcaatatattacattttgtaCTCTTTCTATCCaccgaaaaaataaaaaaataaaaacaatgcatttaCAATAAAGACACGACTGTGTTGTAATGGAATCAGTGTGTTCTGTTATTTGGAGGTGTATGAGGGAAGCTGTGGGTTGTTTGGGGTAAAGTAGATCACAGCTCAGCGCAGGATGATTGAATAGTGCCTGAGAAACGGGACTCAGCTGTGG

Function

NR:

description
PREDICTED: ras/Rap GTPase-activating protein SynGAP isoform X7

GO:

id name namespace
GO:0007610 behavior biological_process
GO:0050795 regulation of behavior biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104104 True 986 lncRNA 0.32 1 936248 937233

Neighbor

gene id symbol gene type direction distance location
eef1akmt2 mettl10 coding upstream 98095 834977 ~ 838153 (+)
arhgap5 arhgap5,LOC107594795,LOC107733129,LOC107719447,LOC107561551 coding upstream 121558 776124 ~ 814690 (+)
nubpl nubpl,LOC107719449,LOC107697759,LOC107561549,LOC107733195,LOC107674123 coding upstream 174525 754239 ~ 761723 (+)
cinp NA coding upstream 264673 667205 ~ 671575 (+)
adprhl2 adprhl2,LOC107697751,LOC107674064,LOC107594801,LOC107719508 coding upstream 269944 661539 ~ 666304 (+)
LOC103042422 LOC107594852 coding downstream 78600 1015833 ~ 1033566 (+)
adam12 LOC108436745,LOC108270250,LOC107752796,LOC107697763,LOC107592760,LOC107733079 coding downstream 101641 1038874 ~ 1179637 (+)
LOC103043042 LOC108436743,LOC108269478,LOC107752797,LOC107733148,LOC107697766 coding downstream 249887 1187120 ~ 1203142 (+)
LOC107197738 ywhaqb,LOC108436740,LOC107733143,LOC107752793,LOC107592764,LOC107697768,LOC105896734 coding downstream 366834 1304067 ~ 1318118 (+)
gcfc2 gcfc2 coding downstream 382186 1319419 ~ 1329088 (+)
G77207 NA non-coding upstream 22588 913108 ~ 913660 (+)
G77203 NA non-coding upstream 27968 907806 ~ 908280 (+)
G77201 NA non-coding upstream 32262 903418 ~ 903986 (+)
G77200 NA non-coding upstream 33009 903038 ~ 903239 (+)
G77181 NA non-coding upstream 41589 786239 ~ 894659 (+)
G77214 NA non-coding downstream 28581 965814 ~ 1050942 (+)
G77215 NA non-coding downstream 33318 970551 ~ 977452 (+)
G77245 NA non-coding downstream 301111 1238344 ~ 1238806 (+)
G77259 NA non-coding downstream 328604 1265837 ~ 1266074 (+)
G77375 NA non-coding downstream 406863 1344096 ~ 1345264 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other upstream 570 883297 ~ 935678 (+)
G77154 NA other upstream 303876 631714 ~ 632372 (+)
G77059 NA other upstream 415658 519633 ~ 520590 (+)
ldah ldah other upstream 802945 84719 ~ 133303 (+)
G77212 NA other downstream 67896 1005129 ~ 1008842 (+)
G77410 NA other downstream 547437 1484670 ~ 1485050 (+)
c9h15orf52 NA other downstream 591737 1528970 ~ 1563180 (+)
G77471 bub1b other downstream 756123 1693356 ~ 1696981 (+)
zfyve19 zfyve19 other downstream 760732 1697965 ~ 1708297 (+)

Expression


Co-expression Network