G77399 (LOC103037189,LOC108269635,LOC106588122)


Basic Information

Item Value
gene id G77399
gene name LOC103037189,LOC108269635,LOC106588122
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1448824 ~ 1452208 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104361
atttgtagTCTCATAGTTAAGGTATGCCTCAACTTGCAAGACAACTGTTGGCAGTATGTACAACATACCTGTAATTTCCATGGAATGGAATAAAAAGCAATATCTATTTCATACACACTATCTCTGAAGAGAGAAACTTTCCCTAGACAGGCAAAGATTTTTCCAGGGAAGGTTATGCGGTTGAGACGATTACATTTAAAGAGTATACAGTGCCGTGTACTACATACCAAAATGGACATACTTACCTGTaattgagaaaataaaataactgcaTTTGAACTGCACTGTGTAACATTCAATTGAAATTCCTGCAGGGAATATTACCTGTATTAAATATTGTCCTCGTTTGGCGCAGCAaatcagaaagaaaaaataaaagtcccaaaACTATGACGTGAGGATGCGTAAAAGTAGAGGCCATCTAATTCCACTTACAATCTCAGGCAAAACAACAAACTACACAATAACAGAACGCAGCCCCAACgttacaattaaataaacatttttgcaacaaacatttttccaaaaaaggGGAGAACTTCAGTCTTCTATACCAGTGAAGTGGGTCTCACAGCCACATACCCTCTTTTTTATAAAAGCACCATCTTTTTTGTGGAAAAGTACAAATCTTACAAAggtaaactatttttaatgacTGTTTTCTCCTCCTGACGTCTCCAAACAGGCTCATTCGGGAGAGAACAATAAGAGGGCTGTATCTTGTAGCTTAATGTATGTAATTTGTGCACGACTAACTGAGGAGGCTATAAAAGGTTTCTGCAGTCTTTGACTGTCGAGCTGCCACTCTTTGGAGGGGAATGTGGCTGGGCTTGATCCGTGTGCGGAGTGGCATCAGCGCTGGGAGGGTGAAAGGCAGGAAACTTCAGAGAGCCTTTCTCTGGATCCTCCTCCCAAGACTCTGAACACacgaaaaagaggaagaagagagggAAGGACGGGTtgtggagggagagagagagagaaggagaggaggaggaggatggagcTGAGAGTCTGAACCGAGGTTTCCCCACTGCTGGGAAGCGTGAGCTGGATCTAGCTGGGCTCCACGCGGAACTTTTTCTTCGTAGGCGGTTCCTCAGGCTCCGACTCTGAGCTGGTGTCAGAGCCTCCGTCGAAGGCTGAGACGGCGCTGCCCTTAGGGTTGGTGTACAAGCTGCTGTCCGAGGAGTAGCTGGCCTGGAGCTGCGCGTTCCCCTTGGCCTTTTCCAGAGCGCGGACTTGCTGTTCCAGGAGCGCGTTCTGTTTCTTCAGGTCATCAATGTCCTGCTGGTGTGTGTGGTTCTTTCGGCGCATGTATTGGATGTACTCTGTGGCTTTGTCTAGAATCTGAGCTCGGGAAGCCTGTTTAACAGAGTGCTGTCAGCAAAGAATCACTACTAAACCATGACGCAATGTTTGGTGACACAACATATACAACACTTAACAAGAAACACCATCAACAGTCCTCTAGTTACAGCTAATATGTTGCTCTTGAATTATTTCCTCATAGGTACAGTACAAATAAAAAGCTGGTATAtagaaatatatcatataaataaatattacagacTACTGCATAGAGTCAATaagcaaaatttactttatttactctatttgtaaaaaaatatttacgaTCTGAGGAATATTCTAAAGAACCTGatctaaaacaaactgaacaaaCTGAGATCAAACAACTGAATCAAACAGTACTGCAAACGCTATTACAAATAttgccatatttttcacactacaaggcGCAacggataataataataggcggataatgctaatgatgctccagcagtgctagccggggataGCAGCTGGCTAAAGGCCattaatactcatctctgaacaggtcgatattagctagcagttcgtcctgcgaagcttgttttaatacggtAAATGCACACAGGCTACGGTCCGATATACtttagttagcggctaatgctaatgctgctcctgtCTCGAGTGccagagaactaaactgaaactcctgtataactctgtacttcagtggagaggctttactgcttcttaatacctgactgatacaattcatacataaggagcaccggattataaggagctctgatgatttttgtgaaaattaaaggattttaagtgcatcatatagtgtgaaaaatatggtactcaaAAGAGgcaataaacaagtaaacagcAGCCAAGAAAGACATGAACCATACAGTGAATTACTATtactctctacactctactaaaaacagtatttaaatgTAGATCCCCATTCATTTATATCTCATTTGCAAATTAAACAGAAGCCTGAATGAGAAATTTGATATCCAACCTTCTCTCCTTGTAAAGCAGGCACTGAGTCACGTAAACTGTGGAAACTGTCTTTAATGTGGTCCCTGCGTTTGCGCTCCAGTGCATTGTGATGTGCCCGTTTGTCTGCCTGCAATAAATAAAAGCCAACAAATagattaataaaacataattaaacaggCTAAAACAATCAATACACTCTAGCCCAGGCTTAGACTGCACAGCAATTTGACTAGAGATTTTCAAATGAGAGAAATATATAGGACATTGCgaggcttaatctctgtctgggaaactggcacaatatttatttttatttttttatcaagtgTTTGTAGAAAAAGGTACGTACAAATTACTTATTTACAAATTCTTCACATCAATAAGTATTGTTGACAAGATACaccaaaaatatt

Function

NR:

description
protein max isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104361 True 2726 lncRNA 0.40 2 1448824 1452208

Neighbor

gene id symbol gene type direction distance location
gcfc2 gcfc2 coding upstream 119736 1319419 ~ 1329088 (+)
LOC107197738 ywhaqb,LOC108436740,LOC107733143,LOC107752793,LOC107592764,LOC107697768,LOC105896734 coding upstream 130706 1304067 ~ 1318118 (+)
LOC103043042 LOC108436743,LOC108269478,LOC107752797,LOC107733148,LOC107697766 coding upstream 245682 1187120 ~ 1203142 (+)
adam12 LOC108436745,LOC108270250,LOC107752796,LOC107697763,LOC107592760,LOC107733079 coding upstream 269187 1038874 ~ 1179637 (+)
LOC103042422 LOC107594852 coding upstream 415258 1015833 ~ 1033566 (+)
LOC103037734 LOC105015678,LOC106588052 coding downstream 17807 1470015 ~ 1479658 (+)
mthfd1 mthfd1,LOC108269612 coding downstream 45914 1498122 ~ 1514730 (+)
plcb2 plcb2 coding downstream 129548 1581756 ~ 1617335 (+)
ankrd63 NA coding downstream 192860 1645068 ~ 1647692 (+)
spint1 NA coding downstream 282413 1734621 ~ 1752108 (+)
G77373 NA non-coding upstream 80239 1368102 ~ 1368585 (+)
G77376 NA non-coding upstream 99170 1345343 ~ 1349654 (+)
G77375 NA non-coding upstream 103560 1344096 ~ 1345264 (+)
G77259 NA non-coding upstream 182750 1265837 ~ 1266074 (+)
G77245 NA non-coding upstream 210018 1238344 ~ 1238806 (+)
G77402 NA non-coding downstream 11030 1463238 ~ 1464202 (+)
G77403 NA non-coding downstream 12698 1464906 ~ 1465270 (+)
G77408 NA non-coding downstream 28613 1480821 ~ 1483275 (+)
G77411 NA non-coding downstream 33625 1485833 ~ 1486321 (+)
G77413 NA non-coding downstream 41952 1494160 ~ 1494435 (+)
G77212 NA other upstream 439982 1005129 ~ 1008842 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other upstream 513146 883297 ~ 935678 (+)
G77154 NA other upstream 816452 631714 ~ 632372 (+)
G77059 NA other upstream 928234 519633 ~ 520590 (+)
ldah ldah other upstream 1315521 84719 ~ 133303 (+)
G77410 NA other downstream 32462 1484670 ~ 1485050 (+)
c9h15orf52 NA other downstream 76762 1528970 ~ 1563180 (+)
G77471 bub1b other downstream 241148 1693356 ~ 1696981 (+)
zfyve19 zfyve19 other downstream 245757 1697965 ~ 1708297 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other downstream 460324 1912532 ~ 2009418 (+)

Expression


Co-expression Network