G77447


Basic Information

Item Value
gene id G77447
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1578277 ~ 1618327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104450
atcactagtgatgcccccccaacacaccaggagggtgaagattaactagcacacgcctcctccgatacatgtgaagtcagactccgcctctttttgagctgctgctgatgctgtagcattgctgagtagcatcacagcgctaacgctcggaggaaaagcagcgcagcgactcggttttgatacatcagctcacagacgcagccttgtgctgatccacatcaccctaggagtgatgaggggaaagagagagagtgccatctactttactgtactcacccagagagagcaagaacaattgtgctctctcagggctccagcacctgatggcaagatgcatgaatgggattcgaaccagcgatctcccaatcattgGTGGTTTAAGGTTGATTAATGTTCAATTTAGGATTAAGTTGCATTTATATTAGACATTCAGTTGATTGTTAGGTTAGCATCTACAATGAGGCATCTACAAtgcaccatccaaataaagggGGATGGTTTATAATAAAACCTAAACATATTAGTCTTTATATATTTAGCTATAGCTCCCTTTggttttatcttttatcttttttttgtgaaatgtaaaaaaaaaagactcaaaTTTTCAGCTGAACAACTCTGTATATCATATTTTCAGTTACTCAAGTTTGGAAATAAAGTTTTTGGAAGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104450 True 676 lncRNA 0.42 2 1578277 1618327

Neighbor

gene id symbol gene type direction distance location
mthfd1 mthfd1,LOC108269612 coding upstream 63547 1498122 ~ 1514730 (+)
LOC103037734 LOC105015678,LOC106588052 coding upstream 98619 1470015 ~ 1479658 (+)
gcfc2 gcfc2 coding upstream 249189 1319419 ~ 1329088 (+)
LOC107197738 ywhaqb,LOC108436740,LOC107733143,LOC107752793,LOC107592764,LOC107697768,LOC105896734 coding upstream 260159 1304067 ~ 1318118 (+)
LOC103043042 LOC108436743,LOC108269478,LOC107752797,LOC107733148,LOC107697766 coding upstream 375135 1187120 ~ 1203142 (+)
ankrd63 NA coding downstream 26741 1645068 ~ 1647692 (+)
spint1 NA coding downstream 116294 1734621 ~ 1752108 (+)
LOC103033947 LOC107560184,LOC107678711,LOC107726575 coding downstream 187620 1805947 ~ 1831095 (+)
LOC107197725 LOC108430641,LOC108269631 coding downstream 218462 1836789 ~ 1854878 (+)
dnajc17 dnajc17 coding downstream 469286 2087613 ~ 2146276 (+)
G77396 NA non-coding upstream 58282 1517762 ~ 1519995 (+)
G77413 NA non-coding upstream 83842 1494160 ~ 1494435 (+)
G77411 NA non-coding upstream 91956 1485833 ~ 1486321 (+)
G77408 NA non-coding upstream 95002 1480821 ~ 1483275 (+)
G77403 NA non-coding upstream 113007 1464906 ~ 1465270 (+)
G77457 NA non-coding downstream 35685 1654012 ~ 1655515 (+)
G77464 NA non-coding downstream 76837 1695164 ~ 1756066 (+)
G77484 NA non-coding downstream 138837 1757164 ~ 1771913 (+)
G77493 NA non-coding downstream 248768 1867095 ~ 1869007 (+)
G77510 NA non-coding downstream 408363 2026690 ~ 2030616 (+)
c9h15orf52 NA other upstream 15097 1528970 ~ 1563180 (+)
G77410 NA other upstream 93227 1484670 ~ 1485050 (+)
G77212 NA other upstream 569435 1005129 ~ 1008842 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other upstream 642599 883297 ~ 935678 (+)
G77154 NA other upstream 945905 631714 ~ 632372 (+)
G77471 bub1b other downstream 75029 1693356 ~ 1696981 (+)
zfyve19 zfyve19 other downstream 79638 1697965 ~ 1708297 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other downstream 294205 1912532 ~ 2009418 (+)
LOC103031026 NA other downstream 840118 2458445 ~ 2464321 (+)
G77722 NA other downstream 1281807 2900134 ~ 2978094 (+)

Expression


Co-expression Network