G77471 (bub1b)


Basic Information

Item Value
gene id G77471
gene name bub1b
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1693356 ~ 1696981 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104477
aaaaaaaactatttaaaccccCAGTCTtgcaacaaacaataaaatactataGATATACATTGCAAAACCTATAAAATCGTAAAACCAAAGTTAGTCGTCACTTACAACCAACAGATCCAGTCACCCTGTTGATGGGGGcgaatgtttttttcttccccttTGCTTTAAGCTCCACGAGAGAAATCCTCTGAGGCTCTGGAGGCTCATCTGCTTTCTCCTGAACCAACACTGATGTCATCATCTGCCTGCACACACGTGCCTGCAGTGCCTTGTGAAACTGCTGGAGCTTATCTAGTGGTTCGGCTCCACACTTTAAACCGTCCTGGAAAATAGTGTCAGCCATCCGTGAGTTTCCTCTTTTCTCGTATTCTTCAGACCAGGAAATGTAAAAAGACGCCTGCATCGTGCCTATTCCCTGAGACTGCATATACCGGTAGACATCTAGAGGGTCAGAGCAGCCTTCTGCAAATCTGATCCACAGATCAACGTAACGAGCATCGTTATGATATTTCTTCTCTTCTGTGAACTTCATGACGACTCTTTCTAGAAGAATACTGAAGCTGCTCTCCTTTCCTCCCTGTGGGTAGTTCTGCTCTGTCCATTTTATGTATCTGTCCCAAACATCAAGAGGGTCATCTCCATCGTACATGCGCAGCTCTGTCTCATACGCCTGTTTCTGTTGGTTGAGAGCAGCACTGGAGCCCTCCTGCTGCTGGAGAGCTTGGTGCAGGGCTGAGATGGCTCGGCCTCGTCTCAGTGGCTGGATGTTCTCTTTGCACAGCTCCCACTCGGCCTCGCCCTCCGCCATGATAAACCCAACACACCACACTGATTTACCAGTGACGTGCTTCTCCCTTTATATTGCTTGCGTCTCTGGTTTACGGTACAATACgttatataaaaattatattaaaaatccagTCTTTTTTTGTTCACTGCTGTTCTCAGAGAGAGTCCGTTTATCTTCAG

Function

symbol description
bub1b Predicted to enable protein kinase activity. Predicted to be involved in meiotic sister chromatid cohesion, centromeric and mitotic spindle assembly checkpoint signaling. Predicted to act upstream of or within metaphase/anaphase transition of mitotic cell cycle and protein localization to chromosome, centromeric region. Located in cytosol; perinuclear region of cytoplasm; and spindle. Part of outer kinetochore. Colocalizes with kinetochore. Implicated in colorectal cancer and mosaic variegated aneuploidy syndrome 1. Biomarker of gallbladder cancer; pancreatic cancer; and tongue carcinoma.

NR:

description
PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104477 True 969 TUCP 0.46 6 1693356 1696981

Neighbor

gene id symbol gene type direction distance location
ankrd63 NA coding upstream 45664 1645068 ~ 1647692 (+)
plcb2 plcb2 coding upstream 76021 1581756 ~ 1617335 (+)
mthfd1 mthfd1,LOC108269612 coding upstream 178626 1498122 ~ 1514730 (+)
LOC103037734 LOC105015678,LOC106588052 coding upstream 213698 1470015 ~ 1479658 (+)
gcfc2 gcfc2 coding upstream 364268 1319419 ~ 1329088 (+)
spint1 NA coding downstream 37640 1734621 ~ 1752108 (+)
LOC103033947 LOC107560184,LOC107678711,LOC107726575 coding downstream 108966 1805947 ~ 1831095 (+)
LOC107197725 LOC108430641,LOC108269631 coding downstream 139808 1836789 ~ 1854878 (+)
dnajc17 dnajc17 coding downstream 390632 2087613 ~ 2146276 (+)
fsip1 NA coding downstream 550070 2247051 ~ 2312662 (+)
G77457 NA non-coding upstream 37841 1654012 ~ 1655515 (+)
G77447 NA non-coding upstream 75029 1578277 ~ 1618327 (+)
G77396 NA non-coding upstream 173361 1517762 ~ 1519995 (+)
G77413 NA non-coding upstream 198921 1494160 ~ 1494435 (+)
G77411 NA non-coding upstream 207035 1485833 ~ 1486321 (+)
G77484 NA non-coding downstream 60183 1757164 ~ 1771913 (+)
G77493 NA non-coding downstream 170114 1867095 ~ 1869007 (+)
G77510 NA non-coding downstream 329709 2026690 ~ 2030616 (+)
LOC103031311 inf2,LOC107678755 non-coding downstream 364132 2061113 ~ 2066854 (+)
G77531 NA non-coding downstream 487888 2184869 ~ 2185952 (+)
c9h15orf52 NA other upstream 130176 1528970 ~ 1563180 (+)
G77410 NA other upstream 208306 1484670 ~ 1485050 (+)
G77212 NA other upstream 684514 1005129 ~ 1008842 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other upstream 757678 883297 ~ 935678 (+)
G77154 NA other upstream 1060984 631714 ~ 632372 (+)
zfyve19 zfyve19 other downstream 984 1697965 ~ 1708297 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other downstream 215551 1912532 ~ 2009418 (+)
LOC103031026 NA other downstream 761464 2458445 ~ 2464321 (+)
G77722 NA other downstream 1203153 2900134 ~ 2978094 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 1625104 3322085 ~ 3359744 (+)

Expression


Co-expression Network