G77510


Basic Information

Item Value
gene id G77510
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2026690 ~ 2030616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104528
aaatcagatttttttgctcaatgtggctcagatctgattttttatgGCTGTTTTCAGATCTgttcaaatcagatctgagccactttcatatgtggaCATGCAAATGAATGTCAATGGTCAAATCATGTCAAAttcatgtgtgtttttgcttttacatattagcattagcattagcgctacgtgcttctctctagtacccacactgtatctcttggtgcagctgtgcagctatagctgcaaaaaacagcaaaagcaaaccgcctgtcatcaatgtgcagcatgtgagacgtttcaggaacagatttgagcaaaaaaatcagataagagcaatgtggcttgtaatgtcaACATAGCCTTTCACAcgctatcacacacacacaaccataacatatttaaacagcTTTCACTTTGATCCAGGAGGAAAAAATTGCACAAtatctgaataaaataatgcCTGAACATAATCTCCATTAGAGAGAAAGCCTTCAGGAGAAGTCTTCTTTTTATCAAGTGAAAGCTCGTATTTCAGCGTTTATCAGTCAATTAATGCCAGCtactgaaagaaaaaataaatcccactgttctgatgcATTTAttcacaagttcatattcatgtctCAACACAGCATTTATTAAAGCCAGTCCATCTGCTGTGACGTTAGTGAGATAGCCAGGGACGTTCCTGAGAGGAGACACATGTTGTTGGTAGACGTTCATGATGCTCATGATGTTCCAGATGTCAGCAGAGGCAGATGCTCTAGAACATTTGTATCATGCATTCTCTGGATTTGCCAACTCCCACCCACTT

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009056 catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00500 Starch and sucrose metabolism
ko00710 Carbon fixation in photosynthetic organisms
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU104528 True 808 lncRNA 0.39 3 2026690 2030616

Neighbor

gene id symbol gene type direction distance location
LOC107197725 LOC108430641,LOC108269631 coding upstream 171812 1836789 ~ 1854878 (+)
LOC103033947 LOC107560184,LOC107678711,LOC107726575 coding upstream 195595 1805947 ~ 1831095 (+)
spint1 NA coding upstream 274582 1734621 ~ 1752108 (+)
ankrd63 NA coding upstream 378998 1645068 ~ 1647692 (+)
plcb2 plcb2 coding upstream 409355 1581756 ~ 1617335 (+)
dnajc17 dnajc17 coding downstream 56997 2087613 ~ 2146276 (+)
fsip1 NA coding downstream 216435 2247051 ~ 2312662 (+)
LOC103026471 LOC100304858 coding downstream 434694 2465310 ~ 2468562 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding downstream 440782 2471398 ~ 2474791 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding downstream 730054 2760670 ~ 2864439 (+)
G77493 NA non-coding upstream 157683 1867095 ~ 1869007 (+)
G77484 NA non-coding upstream 254777 1757164 ~ 1771913 (+)
G77464 NA non-coding upstream 270624 1695164 ~ 1756066 (+)
G77457 NA non-coding upstream 371175 1654012 ~ 1655515 (+)
G77447 NA non-coding upstream 408363 1578277 ~ 1618327 (+)
LOC103031311 inf2,LOC107678755 non-coding downstream 30497 2061113 ~ 2066854 (+)
G77531 NA non-coding downstream 154253 2184869 ~ 2185952 (+)
G77532 NA non-coding downstream 159706 2190322 ~ 2190664 (+)
G77534 NA non-coding downstream 166394 2197010 ~ 2290008 (+)
G77544 NA non-coding downstream 231370 2261986 ~ 2303830 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 17272 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 318393 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 329709 1693356 ~ 1696981 (+)
c9h15orf52 NA other upstream 463510 1528970 ~ 1563180 (+)
G77410 NA other upstream 541640 1484670 ~ 1485050 (+)
LOC103031026 NA other downstream 427829 2458445 ~ 2464321 (+)
G77722 NA other downstream 869518 2900134 ~ 2978094 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 1291469 3322085 ~ 3359744 (+)
g2e3 g2e3 other downstream 1735164 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 2258891 4289507 ~ 4298184 (+)

Expression


Co-expression Network