G77720 (LOC108430667,LOC108270194)


Basic Information

Item Value
gene id G77720
gene name LOC108430667,LOC108270194
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2884692 ~ 2892308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104823
tttgccttatgtGCTGTGTAAATGTGTCCATAGCGCTCAAAAtacttctctttctgtttctttgctCATTATCTGCTATCTGCTcaattcatatgtttttttttaaacctccaATTTAACCACACAAGTGCCCATTAGCAAGAGAAGCTTCAgttaaaagtgaaataaatattcACCACCACTTAATCTTTATCCTCTGCCAGTTTAAAGCTTTCATATTGATCCGAGTACAAGTAATTGTGCTCTGAACAAAATGATCTGTTCTGCTGCCGTCTTAATGCTAAATTGTTAATTGCTACCTTAACATTAGAGCTCTGATGCTTAACAGAGCTCAGCATGGATTGGtcagcctgatttaaacacattagACAATGCAGAACGCTGAAtaggatttataaatggtttcaATTATTTGTGGAAATCATTGTGTGTTCACTTGGTGTGAAATGGTatgaaataaatcattaaaattgcACTGATAAGGGCCTTAAGAAAGCAATTATTCACATTTACTGTGGACATCAGCACAATAAAATCTCCTATTAATATTCCTCCATCAGAACTGGATCATTATCATTGTATTTTTTAGTACTTATTAGTGATTGAGTGTGCAGACAATAGACTAAATAACACATTTCTGTTGTTTCCATACACAAACAATGCTAAGACGTACCtacaatgctaaaaaaaaaaaagaaaatgcactaGTCCATAATCAACAGATAAGCTTAAAAATAACAGACACAAACAGATACACGTCCAAAATATTAAACTGTCTAATATTCCTGTCCTGTGCTGAAGGACTTCCATTAACAAATGAAGGAAAATTACATCCATCAATTACATGAAAGCCATCATGCACAATTgttcacacagagagacaaacaaaCGTGCAAATTTATACAGTACTGAATAAAACAGTGAAGAAGTTGATTAGGGTTGGATTGTGCAGTTTCTCGAGGAAGCAGACTGAGAAGATGGACTTACACAATCTCGACTGGGCTTCCCGAGGCTAAAGCGCAGACGCAAAGACTTTCTGGTCGCCTCTTTTTTTGTCACTCTTGGAGAAAAGCAGCCGGCTTTCCCAGATTCCactCGATTAACATTTCTGTGGCTCAGTCTTTTGCTCCTTCTTCTTGAAGAGCTTGCAGACAGTCGACTGATTCTCCCCACAGAGGATATTCCACTCCGAGAGGAGTCCAGGGTTCCTGAGGCACTGTGCACTGATCCAGGTGTGGAACTTCCTCCAAACAGAGGATTGGGAAACAGCTCCAGACCGAGATTCTTCTTAAGAGACCTCCGCTTCTTGTTGGAGAATCCGTAACTCTGCCCCGACTCCATGGGAAGTTTGCGCTTGGGCGTTATGATAACTGGCGTGTCAGTGGAAAAAACCTCCAAAACTGCGCCTGCATCTTTTCACCCCTGAAGGTGTATTTCCATCCTCCGCAGCATCAGCTGGGGAAAATACTCCAGACTCACATCCCAGCATGGCTGGAACTTTGGCGATGAGGAACTCTGGGACCACACCCAAGTCTTCAGCATTATCAATAAGGCACTGCACCACGGCAGCTTGAAGTTTTAGTTTCTTCTCTGTACTCGTGCTCATCTTCTCTGTCCCATCTCCACAGTGGAGGAGGTTTGGAGCAAAGATAACAGAAAGGTTGCCACTGTCCATCTTGTTTTCCCCACACCTCTGAGAGACTCTGTTCAGAAAGCTGAAAAAGTAGCGCAGAATGTTGACATTGCCATGAGGCAGTACACAGGACAGCAGGATGATGGCCGATGTTCTCTCCTCGGAGGTGGGCAGCTCCTGGGCTTTTAGAAAGGCACTCTGCAGGTCTGTGGGCAGGATTGGCTCAGGCAGCTCCCGGAAAAACTGTTTCAGAAGCCCAGCGATGTCCAGTGGGAGGGCAGTGGACAGACACTCCTCAGCCTGATC
>TU104824
TTTGCATCTGTAAAGAACTCTTGTACAACACTACATAAAGATGCATTTAAGGTacattaatttgattaacctcACAGCCCTAATGTGACCTCAGTGACCTAATTTCTAACACAATaccaaaagaataaaaataaaataaaataaaataaaacacacacaccactgacctgttgAAGTGCCGTTTCTCAAAACAGCCGGACTAAATGCAGCATCTTTGGTGAAGTGAAAAGTGGTGACGCTCTCTTGTGTTGCTAGACGCCAACCGATGGCCTCTGACCCCTTTGGCACCGGCTGAGAATGTGATAAGACACTACAATCTCGACTGGGCTTCCCGAGGCTAAAGCGCAGACGCAAAGACTTTCTGGTCGCCTCTTTTTTTGTCACTCTTGGAGAAAAGCAGCCGGCTTTCCCAGATTCCactCGATTAACATTTCTGTGGCTCAGTCTTTTGCTCCTTCTTCTTGAAGAGCTTGCAGACAGTCGACTGATTCTCCCCACAGAGGATATTCCACTCCGAGAGGAGTCCAGGGTTCCTGAGGCACTGTGCACTGATCCAGGTGTGGAACTTCCTCCAAACAGAGGATTGGGAAACAGCTCCAGACCGAGATTCTTCTTAAGAGACCTCCGCTTCTTGTTGGAGAATCCGTAACTCTGCCCCGACTCCATGGGAAGTTTGCGCTTGGGCGTTATGATAACTGGCGTGTCAGTGGAAAAAACTCCAAAACTGCGCCTGCATCTTTTCACCCCTGAAGGTGTATTTCCATCCTCCGCAGCATCAGCTGGGGAAAATACTCCAGACTCACATCCCAGCATGGCTGGAACTTTGGCGATGAGGAACTCTGGGACCACACCCAAGTCTTCAGCATTATCAATAAGGCACTGCACCACGGCAGCTTGAAGTTTTAGTTTCTTCTCTGTACTCGTGCTCATCTTCTCTGTCCCATCTCCACAGTGGAGGAGGTTTGGAGCAAAGATAACAGAAAGGTTGCCACTGTCCATCTTGTTTTCCCCACACCTCTGAGAGACTCTGTTCAGAAAGCTGAAAAAGTAGCGCAGAATGTTGACATTGCCATGAGGCAGTACACAGGACAGCAGGATGATGGCCGATGTTCTCTCCTCGGAGGTGGGCAGCTCCTGGGCTTTTAGAAAGGCACTCTGCAGGTCTGTGGGCAGGATTGGCTCAGGCAGCTCCCGGAAAAACTGTTTCAGAAGCCCAGCGATGTCCAGTGGGAGGGCAGTGGACAGACACTCCTCAGCCTGATC

Function

NR:

description
PREDICTED: rho GTPase-activating protein 11A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104823 True 1939 lncRNA 0.43 6 2885761 2892308
TU104824 False 1263 lncRNA 0.49 7 2884692 2892308

Neighbor

gene id symbol gene type direction distance location
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding upstream 20253 2760670 ~ 2864439 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding upstream 409901 2471398 ~ 2474791 (+)
LOC103026471 LOC100304858 coding upstream 416130 2465310 ~ 2468562 (+)
fsip1 NA coding upstream 572030 2247051 ~ 2312662 (+)
dnajc17 dnajc17 coding upstream 738416 2087613 ~ 2146276 (+)
eif2ak4 eif2ak4,LOC107673787 coding downstream 16301 2908609 ~ 2957430 (+)
tecpr2 tecpr2,LOC107758275 coding downstream 369483 3261791 ~ 3296653 (+)
rcor1 rcor1,LOC107719500,LOC107590914,LOC107733187 coding downstream 417510 3309818 ~ 3324750 (+)
LOC103028495 ehd4,LOC108430677,LOC108270320,LOC107697720,LOC107694734,LOC107582305,LOC107719481 coding downstream 473434 3365742 ~ 3393158 (+)
LOC103028182 sptbn5 coding downstream 504151 3396459 ~ 3475761 (+)
G77719 NA non-coding upstream 1668 2879890 ~ 2883024 (+)
G77717 LOC108430628,LOC108269477,LOC107745352,LOC107711907 non-coding upstream 13861 2869857 ~ 2870831 (+)
G77716 NA non-coding upstream 14883 2832568 ~ 2869809 (+)
G77715 NA non-coding upstream 56460 2809559 ~ 2828232 (+)
G77712 NA non-coding upstream 141081 2719123 ~ 2743611 (+)
G77721 NA non-coding downstream 2564 2894872 ~ 2895634 (+)
G77724 NA non-coding downstream 57766 2950074 ~ 2986710 (+)
G77727 NA non-coding downstream 71742 2964050 ~ 2967101 (+)
G77792 NA non-coding downstream 304909 3197217 ~ 3206214 (+)
G77799 NA non-coding downstream 320249 3212557 ~ 3212865 (+)
LOC103031026 NA other upstream 420371 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 875274 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 1176395 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 1187711 1693356 ~ 1696981 (+)
c9h15orf52 NA other upstream 1321512 1528970 ~ 1563180 (+)
G77722 NA other downstream 7826 2900134 ~ 2978094 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 429777 3322085 ~ 3359744 (+)
g2e3 g2e3 other downstream 873472 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 1397199 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 2559807 5452115 ~ 5530055 (+)

Expression


Co-expression Network