G77727


Basic Information

Item Value
gene id G77727
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2964050 ~ 2967101 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104838
TCTATGAAATATGTATTTACAGTtttgcaaaaaaagtaaaataaataagcttGAAGGATAAAAAGCAGATAGAAATGgaaatgtttacaaaaaaaatcaaaataatgtACAGCAGCTTTGGCTACTAAAGGTATCGGTCAACAACCAAACAACACAAATCTCCATTACTCCAACTagagtttagtattaataaataaactatgtgaaaaaataaataatgtactcTTCATCTATTGTTTATCTACCTTTTTACATTTAGGAAATACAGACTGCTGATGGCCTACTCTACTGGGTTTGAGTCAGGGGCTGTTCCACAGGAAACCAACCCTTAGTGTTTCTTAGTGTTTTACCCTCTGTTGCCcttaaaaagcagaaaaacgcacacaaaaatacaattttcatGAAGGttgtttaccgtatttttttgcactacaaagtgcacttaaaatcctttaattttcccaaaaatcatcagtgcaccatATAATCTGTTGCagcttatgtataaattttatcagtcaggtattaaggagcagtaaagagtttcagtttagttctccagcaccaagactggaggagcagcattagcattagccgctaatcatgTGAGGTGCTAGTTAGCTCTTCCGCCATTTAGAAGCAAGTATATCGAActctaatactgctccagtagtgctagccggggttagcagcaggctacaggctgataatactcacctctgaacagcagaaGAACTAGCGTTTAGCGCTGAGGTTAGCGGGTAATGATGatagcagtaggctacaggtcgataatactcacctctgaacagcagaaGAACTAGCGTTTAGCGCTGAGGTTAGCGGGTAATGATGATGCTGCCTcatcagtgctagccggggttagcagtaggctacaggtcgataatactcacctctgactggcagaagagctagcgcttagcgctgaggttagcaggtaatgataattctgctccagcagtgcttgccaGGCTTAACAGCCAGCTACAGGtggataatactcacctctgaacgttcaaaaaagctagcacttagcgtggttagcagctaatgctaatactgattgagaactaaactgaaactcctgtataactctgtacttcagaggagtggtttttactgtttctgaatacctgactggtagaattcatacataaggagcaccgggttataaggagctctgacgatttttgggaaaatttaaaaataaggtgCATAAGTATCCGTTTTCCCAGGAATATTTTACAGACTTTGGTCTTAGCAAACAGGcttataataatgtgtttttcacCAATGAAAAACATCTAGAACATTCTGTTCTAGATCTTGTTGTTGtgttttaatcgttttccttaattttataagaaatttcagctccactgaataTAAACATGTAGAAGCACCTTTCtttttgtagttctgtaattacaggctgtagttctgtatctgtttctctgcaaactttattattctcctctTTTCACCCTCTTCTTCAATGCTCAGGATGCCGCTCaggatcattctcagcactgacactgtggtggtgtgtgttattctggtatgagtggatcaggcacagcagtgccgctggagtttttaaacactctaagcacggtgATAAAATAAAGGCACAGAAAAGACAAAGGCTCTGAATCTTAATCTGTTGCTGCAGAGTTTGAATTGGTCGTCCTGTAGTTCCAGATCTTCAGCAGTGACGCTGtggtgtttaaaactccagcagcactgctgtgtctgatccaatCATGCCAGCAACACACATTACTAACACACTGACTACCACCACAGTATTGGAAAAATTTAAcgttgcaaatgttcttttttttttcaacgaAATATCTTGCTGTTTTGCACCTGGACGAATCAGGAGCTGAGACAGTGCCGAGCTAAActcaaaaccagaggaaaaccgcaaaacaacagtaatcggccctttaatcaggcatttaaattgctttttagAAGGTAAATAAGAACTAGGAACTTTTTCTAAGATTAAAAGcgtaaattcagctgtaactggaaatatctgcaccgCAAATATTtcacacgtgctcacgtttttacaagcacgtgcccaaccatgtggatggaggccatgcatgCTGTTACCTCGCGTTACTCCTGACAGCGCTCTCACCCTCCCCCTCCTCgttgcgcttctcaggcagcagcagcctgtcactcacacagacacatagacagcgctgtgtatctgcttcttcttcttgtgtcaagaatccgAACATTgtaacatgacgtgtttgatttgccttaagtgacatcaaacatcctgcgatgtgactattgtgcatgcgcacattgcgatgacgatgcttcaacgatatatcgtgcagccccctgagcattgaagaacagggtgaaaggagggtgagatacagaactacagtctgcaaTTAGAGAAATATGGGGAAAAACAGTGGATATATTGGGGGTAGAAACTCATGTATAACGAAATCGTTTGCAGGGAATTCTTGCTACCTTACGTCAATTGGACACCAGTGCAGCATTCGGCTCTCgactatcttttttttttttacatttgattaatcaaaGGAACTGTTTTTAATTGTCAGTTTTTGACTGACTGCTGCCACTCAAGCAGAGGAAGCCATAGCAGAAAGCATCGCACAGAAgtgactaactaactaactaactaactagctagttcATACTACAGGCAGTATATAAAACACTTTGAACTAGAAATGATGAATGCATCATATGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104838 True 2790 lncRNA 0.40 3 2964050 2967101

Neighbor

gene id symbol gene type direction distance location
eif2ak4 eif2ak4,LOC107673787 coding upstream 6620 2908609 ~ 2957430 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding upstream 99611 2760670 ~ 2864439 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding upstream 489259 2471398 ~ 2474791 (+)
LOC103026471 LOC100304858 coding upstream 495488 2465310 ~ 2468562 (+)
fsip1 NA coding upstream 651388 2247051 ~ 2312662 (+)
tecpr2 tecpr2,LOC107758275 coding downstream 294690 3261791 ~ 3296653 (+)
rcor1 rcor1,LOC107719500,LOC107590914,LOC107733187 coding downstream 342717 3309818 ~ 3324750 (+)
LOC103028495 ehd4,LOC108430677,LOC108270320,LOC107697720,LOC107694734,LOC107582305,LOC107719481 coding downstream 398641 3365742 ~ 3393158 (+)
LOC103028182 sptbn5 coding downstream 429358 3396459 ~ 3475761 (+)
trnav-aac_2 NA coding downstream 449067 3416168 ~ 3416240 (+)
G77721 NA non-coding upstream 68416 2894872 ~ 2895634 (+)
G77720 LOC108430667,LOC108270194 non-coding upstream 71742 2884692 ~ 2892308 (+)
G77719 NA non-coding upstream 81026 2879890 ~ 2883024 (+)
G77717 LOC108430628,LOC108269477,LOC107745352,LOC107711907 non-coding upstream 93219 2869857 ~ 2870831 (+)
G77716 NA non-coding upstream 94241 2832568 ~ 2869809 (+)
G77792 NA non-coding downstream 230116 3197217 ~ 3206214 (+)
G77799 NA non-coding downstream 245456 3212557 ~ 3212865 (+)
G77808 NA non-coding downstream 253520 3220621 ~ 3297442 (+)
G77804 NA non-coding downstream 293365 3260466 ~ 3300671 (+)
G77817 NA non-coding downstream 427279 3394380 ~ 3394876 (+)
LOC103031026 NA other upstream 499729 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 954632 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 1255753 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 1267069 1693356 ~ 1696981 (+)
c9h15orf52 NA other upstream 1400870 1528970 ~ 1563180 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other downstream 354984 3322085 ~ 3359744 (+)
g2e3 g2e3 other downstream 798679 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 1322406 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 2485014 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 3890253 6857354 ~ 6872405 (+)

Expression


Co-expression Network