traf3 (traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913)


Basic Information

Item Value
gene id traf3
gene name traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3322085 ~ 3359744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104946
aaaataaaaaaaaattctgCATGTAAAACCTACAATACTTACATGAGCTAACCTCCCAACTGTGTTTACTATATTGACACATTATTTTTGGTAATGTTAAACATTGATGATGCTGTGCATCGGGatatattgttctttttttaacaccATTTTGAAATACTAGCTTTCGAGTCTGCATCCATGCAGAGACACACATTTACAAATAATCAGATCACTTTCTAAAGAGCGagtgacagttttgcacaagttgttttttttttaatgtataatgcAAATGtataagaaataaatatgaaacaat
>XM_022672604.1
CCATTTACTACGGTTTTTTTTCATGACGGGGATTTCCTGAGGAAGTCGGAGCGAGGGGGCTTTCCAGTTACTAGAATTGACATCAACAGCACAGGGCTGATCTCTGGTGCGCCTTTTACATTTTCTCTCGCAGGCGAGCTCCGCGACCGCGTTCACCGACAGCAGCCGCTCGACAATGAGAAGGTGTGGAGGCTCGGCCGCCGCTGTCGGACGGGGAGCTCGTGTGGAGCTGGTCATTAGACGCCAGGGTGAGAGCTAGAGACTGCCTTTCATGAGTGGCAGCGGCTCTGTCTGCTGGGATATTGTTCGGAGGAAAAGTGCGGCGATATCGGACGACGTGTCTATAACTGATTCATGTCATGTCAGCGGGGCGCAGTGTGGACGGGCGGGAGCAGCAGGTGGCGCTGCAGCAGTGCTTCACTACGCGTGAAGGTTTCCTGCCTCTGCGCGAAGGCTTCAGAGATCACTTTGTCATGCCACCTGAGCCCAAGTACTGCTGCGAAGCCTGCCAGTTGGTGCTGTGTAAACCGCGGCAGACGGAGTGCGGCCACCGCTTCTGCGAAACCTGCATCAAGGACCTGCTCAGTAAACCTAATCCAGTGTGTCCAGCTGACAGAGAACCACTGTTTGAAGATAAGATATTCCGTGATGTTTGCTGCTACAGAGAGATTTTGTCCTTGAAGGTTTACTGCAGGAGCTCCAAGAATGGCTGTAAAGAGCAGATGAGTCTACAGCAGGTTATGGACCACTTGAACGTGTGTGAGTACTTTGAAGTGCCCTGCCCTTTGGGAAAGTGTAAAGAGAAGATCATGAGGAAAGACATGGCCGAGCACTTGAGCCGCAAATGCAAACACAGAGAGACCACCTGCGAATTCTGCAAACACAAAATGGCCCTCACAGAGCTACAGAAACACAAGGAAACGGTGTGTCTTGCGTATCCAGTGAAGTGTCCTAATCATTGTTCGTTTTCCTCTATATTAAGGAGTGAGaTGTCCAGTCACCAGCATGACTGTCCAAAGGCTCAAGTCACATGCCCCTTTTTTCGTTTTGGCTGTTCCTACAAGGGATTAAACCAAGAAATGAGGGAGCACGAATCAAGCTTTGCCTCAGAACACCTGCGGCTGATGGTGGCCAGAAACAACACACTAGAAGCCAAGgtggaAGAAGTGAAGAGTGAGCTGATGGAACGCTACAAAGTTCTCCCCAGTCTGAGCAGCCGCCTTACAGAAGTGGATGCGCAGTATGAGGAGATGAGGGAGAAATACCggcagctggagctgaagctatCCTCCATGCAGAAGCTGATGAGTTCTCACTCAGAGAAGCTCCTGGAGGTGGAGATGGAGCTGCGGGACCTGCGGCCACTGAGGGCGATGAGGGATGAAGTGGAAGCTTTGAGGGGAGCTGTGGAGAGCATGCGCTCTATGGTAGCATCTCTCGACTCTGCCCGAACCGGTGCTGGTACACTTACCCTGGCCTCCTTAGATGAGCAGCTGTCGAGTCACGACCAGATGCTTAGTGTCCACGACATCCGGCTGGCGGACATGGACCTGAAGCTGCAGGTTCTGGAGACGGCCAGCTTCAACGGCACGCTCATCTGGAAGATCCGCGACTACAAGAGGCGGAAAGCAGAAGCTGTGGCCTCCAAGACGCTCTCGCTCTACAGCCAGCCCTTCTACACCGGCTACTTCGGCTACAAGATGTGCGCCCGCGTCTACCTGAACGGAGACGGCATGGGCAAGGGCACTCACCTGTCGCTGTTCTTCGTGGTGATGCGCGGCGAGTACGACGCCCTGCTGCCCTGGCCCTTCAAGCAGAAGGTGACGCTCATGCTGATGGATCAAGGCCCGGCACGCAAACACCTGGGTGACGCCTTCAAGCCTGATCCCAACAGCAGTAGCTTCCGCCGGCCCACCGGAGAGATGAACATTGCCTCGGGCTGCCCGCTCTTCGTGGCCCAGACCGTGTTGGAAAACGGCACTTACATCAAGGACGACACCATCTTCATCAAGGTCACGGTGGACACGTCTGACTTACCCGACCCGTGAAGGTCAGGCTAGCCCATTCGCTTCTAGTCCCAAGGGCCTGGTGCTCAGTGTGGACGTCAGTAGGCCACGGGGGTGGAAAACGGAGAGGAGCTGGATCCAGGGCAGAGAATGAAGAGAGATACACACAAGTGAGTCCTGAGAGTCCCCCGGTCTCAGAGTTCTGGTCCAGAAGATGTGTGAGGTGTGGTCTTTTTAAGGTCGCCGTTTGTTGGaagatggttggatggatggataaatggacgGATGGAATGGATCGTGTTCATTTGCCAGGGTAGTGAAGGTCTACGGCCTGTGGTTATGGTGTTCACacagagaagagcagagaagaGCAActctaattaattaaacaaaaagtgcATTTGATGGTAGTGCTGGGGTTAACTGACAATGTGAGGAGGCgcctgaaataataaataaaactgttccACACATCAGCAGCGAAGTCTATATATTTAACGAACAAGAGATGCCTTGTATTTGGTTGTATTCAGTGACAATTGGATGTTTTAATAAAGCATTGTTAAGTGTATAAATGTTCGGATGAGTCCATATAGAGCAGACTTTCGTGAGTAGGATGTGTCGTGTTTGCAGGCAGTGGTAGTGGCAAATTTGTGTTGATGGAACCGGGGAAGGAAAGCATGAGGATGTAAGTTGAGCACTAATAACTGTGCTAGAGCTCCCTCAGTAtgggggcaaaaaaaaaaaaaaaaaaaaaaaaagatttttctgCATGTAAAACCTACAATACTTACATGAGCTAACCTCCCAACTGTGTTTACTATATTGACACATTATTTTTGGTAATGTTAAACATTGATGATGCTGTGCATCGGGatatattgttctttttttaacaccATTTTGAAATACTAGCTTTCGAGTCTGCATCCATGCAGAGACACACATTTACAAATAATCAGATCACTTTCTAAAGAGCGagtgacagttttgcacaagttgttttttttttaatgtataatgcAAATGtataagaaataaatatgaaacaatggggaaaaaaa

Function

symbol description
traf3 Predicted to enable tumor necrosis factor receptor binding activity and ubiquitin protein ligase binding activity. Acts upstream of or within response to yeast. Predicted to be located in cytoplasm. Predicted to be active in cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in brain disease. Orthologous to human TRAF3 (TNF receptor associated factor 3).

NR:

description
PREDICTED: TNF receptor-associated factor 3

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042981 regulation of apoptotic process biological_process
GO:0032088 negative regulation of NF-kappaB transcription factor activity biological_process
GO:0033209 tumor necrosis factor-mediated signaling pathway biological_process
GO:0001817 regulation of cytokine production biological_process
GO:0050688 regulation of defense response to virus biological_process
GO:0016567 protein ubiquitination biological_process
GO:0001878 response to yeast biological_process
GO:0008063 Toll signaling pathway biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03174 TRAF3; TNF receptor-associated factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU104946 False 301 lncRNA 0.30 2 3322085 3359733
XM_022672604.1 True 3070 mRNA 0.50 12 3331931 3359744

Neighbor

gene id symbol gene type direction distance location
tecpr2 tecpr2,LOC107758275 coding upstream 25432 3261791 ~ 3296653 (+)
eif2ak4 eif2ak4,LOC107673787 coding upstream 364655 2908609 ~ 2957430 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding upstream 457646 2760670 ~ 2864439 (+)
LOC103026149 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC107743909 coding upstream 847294 2471398 ~ 2474791 (+)
LOC103026471 LOC100304858 coding upstream 853523 2465310 ~ 2468562 (+)
LOC103028495 ehd4,LOC108430677,LOC108270320,LOC107697720,LOC107694734,LOC107582305,LOC107719481 coding downstream 5998 3365742 ~ 3393158 (+)
LOC103028182 sptbn5 coding downstream 36715 3396459 ~ 3475761 (+)
trnav-aac_2 NA coding downstream 56424 3416168 ~ 3416240 (+)
trnav-aac_3 NA coding downstream 57095 3416839 ~ 3416911 (+)
trnav-cac_1 NA coding downstream 60183 3419927 ~ 3419999 (+)
G77804 NA non-coding upstream 21414 3260466 ~ 3300671 (+)
G77808 NA non-coding upstream 24643 3220621 ~ 3297442 (+)
G77799 NA non-coding upstream 109220 3212557 ~ 3212865 (+)
G77792 NA non-coding upstream 115871 3197217 ~ 3206214 (+)
G77724 NA non-coding upstream 335375 2950074 ~ 2986710 (+)
G77817 NA non-coding downstream 34636 3394380 ~ 3394876 (+)
G77847 NA non-coding downstream 182508 3542252 ~ 3549615 (+)
G77961 hectd1,LOC107694830 non-coding downstream 557060 3916804 ~ 3921829 (+)
G78053 NA non-coding downstream 653006 4012750 ~ 4013009 (+)
G78055 NA non-coding downstream 672519 4032263 ~ 4032562 (+)
G77722 NA other upstream 343991 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 857764 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 1312667 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 1613788 1697965 ~ 1708297 (+)
G77471 bub1b other upstream 1625104 1693356 ~ 1696981 (+)
g2e3 g2e3 other downstream 406036 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 929763 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 2092371 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 3497610 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 4234963 7594707 ~ 7607664 (+)

Expression


Co-expression Network