G77817


Basic Information

Item Value
gene id G77817
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3394380 ~ 3394876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104955
gcttttagtaaaattgctgtttgtatttattctattttagtgttttactgagctaataaacacttaattcacagataagaagctttttctttacttaaaatgcccacaggtgcctaaaacatttgcacagtactgtatatatccaGTAGAATGTTACACAGGGAATTAGTTTTTATAACGTGTTGCCTACGTCTTATATTACAGCTGCATTTAAGACCCAATATTCTGTTTTATGGCAGAAGAAGACGACATTCTTGTCTTTGTATGATTGACTTGTGTTTTTGCTGGACCTGTTCAGTTTGCCTTGCTATAACGATGTGCTCTGTATAGAATAGGACAGACTGGAGAATTAAAAGTTATGTACAGTGATGTTAAATGATGTTAAAATGATGTTAAATGATGTTAAAAGTTTTGACCAGTTGGACAGAACTGGCCTGTATTCATTTATACTCTACTAATTATACTACTGTAGAAAA

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
TU104955 True 476 lncRNA 0.33 2 3394380 3394876

Neighbor

gene id symbol gene type direction distance location
LOC103028495 ehd4,LOC108430677,LOC108270320,LOC107697720,LOC107694734,LOC107582305,LOC107719481 coding upstream 1222 3365742 ~ 3393158 (+)
rcor1 rcor1,LOC107719500,LOC107590914,LOC107733187 coding upstream 69630 3309818 ~ 3324750 (+)
tecpr2 tecpr2,LOC107758275 coding upstream 97727 3261791 ~ 3296653 (+)
eif2ak4 eif2ak4,LOC107673787 coding upstream 436950 2908609 ~ 2957430 (+)
LOC103030398 LOC108430666,LOC106610840,LOC105908184,LOC108270264 coding upstream 529941 2760670 ~ 2864439 (+)
LOC103028182 sptbn5 coding downstream 1583 3396459 ~ 3475761 (+)
trnav-aac_2 NA coding downstream 21292 3416168 ~ 3416240 (+)
trnav-aac_3 NA coding downstream 21963 3416839 ~ 3416911 (+)
trnav-cac_1 NA coding downstream 25051 3419927 ~ 3419999 (+)
foxg1 foxg1,foxg1a,LOC107590911 coding downstream 87262 3482138 ~ 3484662 (+)
G77804 NA non-coding upstream 93709 3260466 ~ 3300671 (+)
G77808 NA non-coding upstream 96938 3220621 ~ 3297442 (+)
G77799 NA non-coding upstream 181515 3212557 ~ 3212865 (+)
G77792 NA non-coding upstream 188166 3197217 ~ 3206214 (+)
G77724 NA non-coding upstream 407670 2950074 ~ 2986710 (+)
G77847 NA non-coding downstream 147376 3542252 ~ 3549615 (+)
G77961 hectd1,LOC107694830 non-coding downstream 521928 3916804 ~ 3921829 (+)
G78053 NA non-coding downstream 617874 4012750 ~ 4013009 (+)
G78055 NA non-coding downstream 637387 4032263 ~ 4032562 (+)
G78057 NA non-coding downstream 641438 4036314 ~ 4036575 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 34636 3322085 ~ 3359744 (+)
G77722 NA other upstream 416286 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 930059 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 1384962 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 1686083 1697965 ~ 1708297 (+)
g2e3 g2e3 other downstream 370904 3765780 ~ 3824872 (+)
G78111 pole2 other downstream 894631 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 2057239 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 3462478 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 4199831 7594707 ~ 7607664 (+)

Expression


Co-expression Network