g2e3 (g2e3)


Basic Information

Item Value
gene id g2e3
gene name g2e3
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3765780 ~ 3824872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105124
GAATGTGAAGATGGACAGTGTGCAGCATCTCTAGAGGACATTCTTCTATTTGCCACCGCTACAGATGTGATCCCCGCCATCGGCTACAGCCCCGCACCCATGTTATCATTCTTTACCCCCCTCGACCCCTCTTGTGCTTTTCCTCAAAGCCAGCCTGAAGCTAACCATCTCATTCTGCCTGTGCTGCCCTCCTACGAGCTGTTCAAAAAGCACCTGGAGTATGCTGTATGTGAGCTGTCTGTGATGCAGGTCCTTTAAAACCTCTGAAGTCTCCAGAACTTTTGGGTCAGAGATGAAATGCAGACTGTAATGGTGCTACTTGCTTACCTTTGGAATATATATCTCATCTGCCACAGCATCGTGGATGTTGGACTATCAGGAGTATATAGGCATTTGTCCTATAAAATCTCATGGTGGGAgagctacagaaaaaaaataccaaaaaatgaGCAGacttttgcattattttcagAACAGGTTATGAAACTtacattttacctttttttgtgcGAAAAAATAAAGTGTGTAACTTTTTGATTGTGATATTGGTGTGATTTAATGTGgtgtaaataaaacagaatgttAGAGCTTTTGAGATTcagaatacatatttatatttaaacctCTTGCATCCTCTGTAAACATAATGTTTCTCCAATGTTacactgtttctctgtgttcctcTTTTCTTAGTTTTTGGTAAAAGGTGCTTTTTCATGCTTTTGTTGGTCTTGCCTGTTTATATAGTCTTGCGCAAAAGATTGGACTTGACAAGG
>TU105125
atgtgtttttttttTTTTTTGCTTATATTTACTAGTCTTAAAATACTAGGTATTGCATGTCAGTGGAGATATGTAACGTTATGCATTAAATGCAGTGCTCGTTTTCCCTCAGTTTATGTTGTTTCTGTGAAAGCTTGAGAAATATTCTGAGAATTTGTTGATATCCATAatcattttttctgatttgcAGGTCCGTCCTTCAGTCTTGATCTTCTGAAAAGCATGTAATGAGAAACTGTTGcccattatttattaaatacttcCTTTCTGATGTTTGCATTGTCTTTAACTTCATAAGCTGATATTCTTTAAACATGcctattaaaac
>XM_022672461.1
CAGGAGCGAGCTGGGCGGGGCTTCATCGGCAGAGGGATTTTCGAAAACAGAGGATTGATTTGTGAAGCGGAGAGCGGAGAGAGCCCTTTAATTTCTGGAAAATTCTGCTTTTTCCTTttggatatttagtggaatCGGCTTTATTTTGGAACCAGGAGAAGAGCGGTCTGGAGCCTGAGCTGTGCTGAGCGGTAGATTTATCGAAAGCGAGCTGACTTGAGGCGATGCGAGCTTTATTACACAGACCAGTAAAGTAATTTAACGTTAAAGACCCAGACCAGACCCAGGTAACTAACTTAGATTATTagcgttatatatatattaaactacAGAGGCGGCGGAGAGCTAACGTTACAGgttattactgttactgttagttATAAAGAGGAGGATGATCAGGTTTTTATTAACTGTTATTGAGTGTGAGAATCACGAGGCCAAGAATAAACGTTAAAGTTGCCTACTgtaactttttgtatttttatatgttagTGAATTTTAACGTGTAACGTATTTTGGACAACATTTAAACAGTCAGCTGTCGCTCGTTTAACGATAAAAGTCTAAAAATGAGGAAGACAAAGAAGTGTGCTGAACGACTGGTGGGCTCTGTCAACGACGTTTGTCAGCTCTGCAATCGACGTGACAACTGTCCAGACAAATATGGAGAGAAGTTCACCCTTAAAAAGCACAACATCACCGTCCATTATTTCTGCCTGCTGATGTCCAGTGGAATATTCCAGAGAGGAAAAGAGCATGAGGGTATTCATGGCTTTCTTGTAGATGACATAAAGCAGGAGATTCGCAGATCTTCCAGACTgAGGTGCGTTGCCTGTAAAAAGGTTGGTGCTTCGGTAGGATGCTTTATTAAAAGCTGCAGACAGATGGTCCACATGCCTTGTGGAGTTGAGCAGCAGTTTATCTTCCAGTTCACTGACTCTTTCCCGTCTTTCTGTAAAAAGCACAGACCCACCCAGACCTGCTCTTCAGTCCCCACTCTGCCTGTCTGCTGCTCCATCTGCTTGGAGCATATCGAGCCGGTTCTGTCCTACTCTGTGCTCAAGTGTCCTGCTTGTCATGGAAGTTGGTTTCATAGGAACTGTGTTCAGTATCAGGCACACAGTGCTGcaaagtttttctttaaatgtaCCCTCTGCAACAACAAGGACCAGTTCCAACAAGAAATGCTCAGAATGGGAATACACATACCAGAAAGAGATGCATCATGGGAATTGGAGGATAATGCTTATGGGGAGCTGTTGGAAGTGTACCAGCATTGTGATGCTGTGAAATGTTCCTGTGAAAAAGGGCGAGGTTACAGTGCAGAGACAGGGGTTTTTGAGATTGTCAGATGCAAATTCTGTGGATCCAGAGGAACCCACCGAAAATGTTCCTCCCTCAAGAATTATGAGACCAGCTGGAGTTGTATTGACTGCAAAGGTGCAGCTGAAGGAACAGTGTCCACGTTGCCAACCCATGTCAAATCACCCCTGGCAAAGAGGCAAGAAAAGAAGAGATTAATTAAAAGGTGTCTTTCAAGCCTCCACTCGTCACTCATCTCCAAAAGGCGCTGTGTGGATGCAGGTCCTGCAGAGATTTTAATGGATCTTGCCACTCAGTTAATTCCACATCAGACCACAGAAGTGCTGCTAAAAAGCGACCAAGTACTTGAAGCTGCCCTGCAGGCTGTGCGGCAGAGTGACTTTAACCCCTGTCACAGACTGTCTGTCAGATTCATCAGAAGCAGAGAAAGTCATAAGGTGGTGAACCAGCACCGGTTCCTCAGCCTCCTCCTGCAGGACCTACAGAACTCATGTGTTTTTGAAGGTCCTGAGGGGTCTAAAAACTTGGCCCTGAATTCACAAGGTGAGTTATTATTAGAAGTAATAGTAATGATGGCATCTCTAAGAACAATGAgttctctctctctctctctctctctctctctctctcaaactaaAATGTCTTCTCTTTTTGTTGCAGATGGACAGTGTGCAGCATCTCTAGAGGACATTCTTCTATTTGCCACCGCTACAGATGTGATCCCCGCCATCGGCTACAGCCCCGCACCCATGTTATCATTCTTTACCCCCCTCGACCCCTCTTGTGCTTTTCCTCAAAGCCAGCCTGAAGCTAACCATCTCATTCTGCCTGTGCTGCCCTCCTACGAGCTGTTCAAAAAGCACCTGGAGTATGCTGTATGTGAGCTGTCTGTGATGCAGGTCCTTTAAAACCTCTGAAGTCTCCAGAACTTTTGGGTCAGAGATGAAATGCAGACTGTAATGGTGCTACTTGCTTACCTTTGGAATATATATCTCATCTGCCACAGCATCGTGGATGTTGGACTATCAGGAGTATATAGGCATTTGTCCTATAAAATCTCATGGTGGGAgagctacagaaaaaaaataccaaaaaatgaGCAGacttttgcattattttcagAACAGGTTATGAAACTtacattttacctttttttgtgcGAAAAAATAAAGTGTGTAACTTTTTGATTGTGATATTGGTGTGATTTAATGTGgtgtaaataaaacagaatgttAGAGCTTTTGAGATTcagaatacatatttatatttaaacctCTTGCATCCTCTGTAAACATAATGTTTCTCCAATGTTacactgtttctctgtgttcctcTTTTCTTAGTTTTTGGTAAAAGGTGCTTTTTCATGCTTTTGTTGGTCTTGCCTGTTTATATAGTCTTGCGCAAAAGATTGGACTTGACAAGGGGTGGATTTTTGGAGcataatttgtaataatttcCTTAAGCTGAAGATATTTTTACACTAGCATTGTACATTATGCatttttaagatgtttaattaagtacattttatgtGAGTGCTTTTACATACTTTTACATACATATGTATACATGGAACTGTACTGCAGGAATATTACTAAGCATTTTCATGAGTCATAAAATGATACCTTTGTAACTTCAGTTTTCCATTGTCAtgaagaatgaaccagtagatATCATCCACACTTATTTGTGTTATACATTGACTACTTTTTTGCTTATATTTACTAGTCTTAAAATACTAGGTATTGCATGTCAGTGGAGATATGTAACGTTATGCATTAAATGCAGTGCTCGTTTTCCCTCAGTTTATGTTGTTTCTGTGAAAGCTTGAGAAATATTCTGAGAATTTGTTGATATCCATAatcattttttctgatttgcAGGTCCGTCCTTCAGTCTTGATCTTCTGAAAAGCATGTAATGAGAAACTGTTGcccattatttattaaatacttcCTTTCTGA

Function

symbol description
g2e3 Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to be active in nucleus. Is expressed in central nervous system; head; pectoral fin musculature; and proliferative region. Orthologous to human G2E3 (G2/M-phase specific E3 ubiquitin protein ligase).

NR:

description
G2/M phase-specific E3 ubiquitin-protein ligase-like isoform X2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K22371 G2H3; G2/M phase-specific E3 ubiquitin-protein ligase

RNA

RNA id representative length rna type GC content exon number start site end site
TU105124 False 776 lncRNA 0.40 2 3765780 3824274
TU105125 False 328 lncRNA 0.31 2 3798018 3824872
XM_022672461.1 True 3290 mRNA 0.41 12 3813883 3824815

Neighbor

gene id symbol gene type direction distance location
foxg1 foxg1,foxg1a,LOC107590911 coding upstream 281118 3482138 ~ 3484662 (+)
LOC103028182 sptbn5 coding upstream 290019 3396459 ~ 3475761 (+)
trnav-cac_1 NA coding upstream 345781 3419927 ~ 3419999 (+)
trnav-aac_3 NA coding upstream 348869 3416839 ~ 3416911 (+)
trnav-aac_2 NA coding upstream 349540 3416168 ~ 3416240 (+)
scfd1 scfd1,LOC107697716,LOC107719485 coding downstream 756 3825628 ~ 3853124 (+)
LOC103022404 LOC108430680 coding downstream 28734 3853606 ~ 3858455 (+)
coch coch coding downstream 43681 3868553 ~ 3879318 (+)
ap4s1 ap4s1,LOC107582370,LOC107590907,LOC107733114 coding downstream 83026 3907898 ~ 3915777 (+)
LOC103044683 NA coding downstream 182643 4007515 ~ 4011258 (+)
G77847 NA non-coding upstream 216165 3542252 ~ 3549615 (+)
G77817 NA non-coding upstream 370904 3394380 ~ 3394876 (+)
G77804 NA non-coding upstream 465109 3260466 ~ 3300671 (+)
G77808 NA non-coding upstream 468338 3220621 ~ 3297442 (+)
G77799 NA non-coding upstream 552915 3212557 ~ 3212865 (+)
G77961 hectd1,LOC107694830 non-coding downstream 91932 3916804 ~ 3921829 (+)
G78053 NA non-coding downstream 187878 4012750 ~ 4013009 (+)
G78055 NA non-coding downstream 207391 4032263 ~ 4032562 (+)
G78057 NA non-coding downstream 211442 4036314 ~ 4036575 (+)
G78059 NA non-coding downstream 220565 4045437 ~ 4104875 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 406036 3322085 ~ 3359744 (+)
G77722 NA other upstream 787686 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 1301459 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 1756362 1912532 ~ 2009418 (+)
zfyve19 zfyve19 other upstream 2057483 1697965 ~ 1708297 (+)
G78111 pole2 other downstream 464635 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 1627243 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 3032482 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3769835 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3831435 7656307 ~ 7729001 (+)

Expression


Co-expression Network