G78059


Basic Information

Item Value
gene id G78059
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4045437 ~ 4104875 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105265
gctttttaatcaaattgaaggaaaaaaaaaaaaaaaacggtatcATGTGTGAAAAGTACTGTGTGTACTGCGTGTCATGATTATAAGTGATATTACTTGTGCTTTCTTTTGGAtgagcagtttaaaaaaaaaggtgtgtatAACTCGTAGAACTCGATTAGGCCATATCCTACCCAATGTATTTGCATATAATCTCCtcatatttgatattttataatatcATACTAGTtttatatcatatcgtatattgaataatataataatgaagagggatttttttgttcttttaaatgGGTGttcaaagtgaaaaaaaaaaaaaaaattaaaaaatcgtCTGGAgcaacatattatatattttggacCAACAAAACAAACTTGAGGGAGGAAAACGACGACGATTCTTCCCCAGAAACTTTATGAACAATAAAAGTGACTTTACAATACATCTCCAAAAACCAGCTGGTTAAGGTAACGGATGGTCTCAGGTAGTtcagagatatatatatttttttaacagtttctgAAAAGCAGTCATTTTTCATCATCGGagtaataaaatatcatttgtAAGAATCCAAGCGCATGGACCCAGCTCAGCACATCATGGCTGTTTTAGAAAGTTCGCAAGTCTTTGTGGTCCTTGATCCTTTTCAGTACCATTCAGAGTTCAAGAGCGTTAGGAAAATTCTTTAAAAGTCTTCAACAGCACAAATCTTAAGTCTTTAGATCATTATTGGACTGATGGAGGACTTCACAGTGACGCCTCCGTCAGTACTCCGTCAGTACATCCAGAGTTCTGGCTCTGGAACTCCTATTTGACGTCCATCACTATTCCAATGGAACTCCAATGGAACTCCAATGATTCCATCATAGTTCTTTCTGTCCGTTCTCTCAGTATAGGGACTCTGGATTGGACGATGGTCTGGCATGGTCTGTATTTTAAAAGCGATAGATGTTAAAGTAAAGGATGGCTGACGATAGTATGTGGAAAAGCGAGAGCTGGGATTGGACGGGAGCTTTGGAACAGGGCTTGGCACTAGGGTCATTCATCTGTTGGTGCTTTCTTTTTGCCCTTGTTTGCCATTGatattagggctgcatgatatatcaTTTAGGCAAGTAAAaacaaacacgtcatgttgcaatgttctGATTCCTGACACAAGaaatacaggtgttggacaatgaaactgaaacacctggttttagaccacaataattgattgtggtgacggacagttctggtggaaacagg
>TU105266
gctttttaatcaaattgaaggaaaaaaaaaaaaaaaacggtatcATGTGTGAAAAGTACTGTGTGTACTGCGTGTCATGATTATAAGTGATATTACTTGTGCTTTCTTTTGGAtgagcagtttaaaaaaaaaggtgtgtatAACTCGTAGAACTCGATTAGGCCATATCCTACCCAATGTATTTGCATATAATCTCCtcatatttgatattttataatatcATACTAGTtttatatcatatcgtatattgaataatataataatgaagagggatttttttgttcttttaaatgGGTGttcaaagtgaaaaaaaaaaaaaaaattaaaaaatcgtCTGGAgcaacatattatatattttggacCAACAAAACAAACTTGAGGGAGGAAAACGACGACGATTCTTCCCCAGAAACTTTATGAACAATAAAAGTGACTTTACAATACATCTCCAAAAACCAGCTGGTTAAGGTAACGGATGGTCTCAGGTAGTtcagagatatatatatttttttaacagtttctgAAAAGCAGTCATTTTTCATCATCGGagtaataaaatatcatttgtAAGAATCCAAGCGCATGGACCCAGCTCAGCACATCATGGCTGTTTTAGAAAGTTCGCAAGTCTTTGTGGTCCTTGATCCTTTTCAGTACCATTCAGAGTTCAAGAGCGTTAGGAAAATTCTTTAAAAGTCTTCAACAGCACAAATCTTAAGTCTTTAGATCATTATTGGACTGATGGAGGACTTCACAGTGACGCCTCCGTCAGTACTCCGTCAGTACATCCAGAGTTCTGGCTCTGGAACTCCTATTTGACGTCCATCACTATTCCAATGGAACTCCAATGGAACTCCAATGATTCCATCATAGTTCTTTCTGTCCGTTCTCTCAGTATAGGGACTCTGGATTGGACGATGGTCTGGCATGGTCTGTATTTTAAAAGCGATAGATGTTAAAGTAAAGGATGGCTGACGATAGTATGTGGAAAAGCGAGAGCTGGGATTGGACGGGAGCTTTGGAACAGGGCTTGGCACTAGGGTCATTCATCTGTTGGTGCTTTCTTTTTGCCCTTGTTTGCCATTGatattagggctgcatgatatatcaTTTAGGCAAGTAAAaacaaacacgtcatgttgcaatgttctGATTCCTGACACAAGaaatacaggtgttggacaatgaaactgaaacacctggttttagaccacaataattgattgtggtgacggacagttgaCGGAAACAGGAGAGCCgcggttttatattttttggatacaatccgggttagcacccaaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggtccttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttatcctcttttgaactctggtatgtctcccataatgttatagtgtgcattgcaatatttagagcagaactgtgctcttaccctgctaattgaaccttcacactctgctcttactggtgcaattaatgaagattgaacaccaggctgctccaatttagacatgaaacctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105265 False 1255 lncRNA 0.37 2 4045437 4104453
TU105266 True 1642 lncRNA 0.39 2 4045437 4104875

Neighbor

gene id symbol gene type direction distance location
LOC103044683 NA coding upstream 34179 4007515 ~ 4011258 (+)
ap4s1 ap4s1,LOC107582370,LOC107590907,LOC107733114 coding upstream 129660 3907898 ~ 3915777 (+)
coch coch coding upstream 166119 3868553 ~ 3879318 (+)
LOC103022404 LOC108430680 coding upstream 186982 3853606 ~ 3858455 (+)
scfd1 scfd1,LOC107697716,LOC107719485 coding upstream 192313 3825628 ~ 3853124 (+)
klhdc1 klhdc1 coding downstream 193921 4298796 ~ 4308409 (+)
dnaaf2 NA coding downstream 205442 4310317 ~ 4313788 (+)
klhdc2 klhdc2 coding downstream 217679 4322554 ~ 4329505 (+)
mok mok coding downstream 249881 4354756 ~ 4364804 (+)
LOC103042329 NA coding downstream 275432 4380307 ~ 4387505 (+)
G78057 NA non-coding upstream 8862 4036314 ~ 4036575 (+)
G78055 NA non-coding upstream 12875 4032263 ~ 4032562 (+)
G78053 NA non-coding upstream 32428 4012750 ~ 4013009 (+)
G77961 hectd1,LOC107694830 non-coding upstream 123608 3916804 ~ 3921829 (+)
G77847 NA non-coding upstream 495822 3542252 ~ 3549615 (+)
G78068 NA non-coding downstream 49868 4154743 ~ 4157865 (+)
G78066 NA non-coding downstream 53642 4158517 ~ 4159317 (+)
LOC111193172 NA non-coding downstream 173236 4278111 ~ 4286231 (+)
G78117 NA non-coding downstream 213179 4318054 ~ 4320327 (+)
G78122 nemf,LOC102775640 non-coding downstream 246578 4351453 ~ 4353277 (+)
g2e3 g2e3 other upstream 220565 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 685693 3322085 ~ 3359744 (+)
G77722 NA other upstream 1067343 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 1581116 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 2036019 1912532 ~ 2009418 (+)
G78111 pole2 other downstream 184632 4289507 ~ 4298184 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 1347240 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 2752479 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3489832 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3551432 7656307 ~ 7729001 (+)

Expression


Co-expression Network